mGSZ: Gene set analysis based on GSZ-scoring function and asymptotic p-value
Version 1.0

Performs gene set analysis based on GSZ scoring function and asymptotic p-value. It is different from GSZ in that it implements asymptotic p-values instead of empirical p-values. Asymptotic p-values are calculated by fitting suitable distribution model to the null distribution. Unlike empirical p-values, resolution of asymptotic p-values are independent of the number of permutations and hence requires considerabely fewer permutations. In addition, this package allows gene set analysis with seven other popular gene set analysis methods.

Getting started

Package details

AuthorPashupati Mishra, Petri Toronen
Date of publication2014-02-17 12:18:46
MaintainerPashupati Mishra <[email protected]>
LicenseGPL (>= 2)
Version1.0
Package repositoryView on R-Forge
Installation Install the latest version of this package by entering the following in R:
install.packages("mGSZ", repos="http://R-Forge.R-project.org")

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mGSZ documentation built on May 31, 2017, 4:14 a.m.