mada: Meta-Analysis of Diagnostic Accuracy
Version 0.5.8

Provides functions for diagnostic meta-analysis. Next to basic analysis and visualization the bivariate Model of Reitsma et al. (2005) that is equivalent to the HSROC of Rutter&Gatsonis (2001) can be fitted. A new approach based to diagnostic meta-analysis of Holling et al. (2012) is also available. Standard methods like summary, plot and so on are provided.

Browse man pages Browse package API and functions Browse package files

AuthorPhilipp Doebler
Date of publication2016-06-14 09:56:10
MaintainerPhilipp Doebler <philipp.doebler@googlemail.com>
LicenseGPL-2
Version0.5.8
URL r-forge.r-project.org/projects/mada/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mada", repos="http://R-Forge.R-project.org")

Man pages

AUC: Area under the curve (AUC)
CIrho: Confidence intervals for Spearman's rho.
cochran.Q: Cochran's Q statistic
crosshair: Crosshair plot
forest: Forest plot for univariate measures
madad: Descriptive statistics for meta-analysis of diagnostic...
mada-data: Diagnostic accuracy data
mada-package: Meta-Analysis of diagnostic accuracy studies mada
madauni: Meta-Analyisis of univariate measures of diagnostic accuracy
madauni-class: Methods for the class 'madauni'.
mslSROC: Plot the Moses-Shapiro-Littenberg SROC curve
phm: Diagnostic Meta-Analysis with the proportional hazards model...
phm-class: Methods for 'phm' objects.
reitsma: Fit the bivariate model of Reitsma et al. (2005) and...
reitsma-class: Methods for 'reitsma' objects.
ROCellipse: Confidence Regions on ROC space
rsSROC: Plot the Ruecker-Schumacher (2010) SROC curve
sens: Sensitivity, Specificity and False Positive Rate
SummaryPts: Use the Zwindermann & Bossuyt (2008) MCMC procedure to...
talpha: The t_alpha transformation as a link function for binary...

Functions

AUC Man page Source code
AUC.default Man page Source code
AUC.phm Man page Source code
AUC.reitsma Man page Source code
AuditC Man page
CIrho Man page Source code
Dementia Man page
IAQ Man page
ROC.ellipse2 Source code
ROCellipse Man page Source code
ROCellipse.default Man page Source code
ROCellipse.reitsma Man page Source code
SAQ Man page
SummaryPts Man page Source code
SummaryPts.default Man page Source code
SummaryPts.reitsma Man page Source code
anova.reitsma Man page Source code
auc Man page
binomCI Source code
binomCIvector Source code
calc.sroc Source code
calc_hsroc_coef Source code
checkdata Source code
cochran.Q Man page Source code
confint.reitsma Source code
crosshair Man page Source code
crosshair.default Man page Source code
crosshair.reitsma Man page Source code
expit Source code
forest Man page Source code
forest.madad Man page Source code
forest.madauni Man page Source code
forestmada Man page Source code
fpr Man page Source code
inv.logit Source code
inv.trafo Source code
jacobiantrafo Source code
logLik.phm Source code
logLik.reitsma Source code
logit Source code Source code
mada Man page
mada-data Man page
mada-package Man page
madad Man page Source code
madad-class Man page
madauni Man page Source code
madauni-class Man page
mcsroc Man page Source code Source code
mcsroc.reitsma Man page Source code
mslSROC Man page Source code
phm Man page Source code
phm-class Man page
phm.default Man page Source code
plot.phm Man page Source code
plot.reitsma Man page Source code
print.SummaryPts Man page Source code
print.anova.reitsma Man page Source code
print.madad Man page Source code
print.madauni Man page Source code
print.phm Man page Source code
print.reitsma Man page Source code
print.summary.madauni Man page Source code
print.summary.phm Source code
print.summary.reitsma Source code
reitsma Man page Source code
reitsma-class Man page
reitsma.default Man page Source code
rsSROC Man page Source code
sens Man page Source code
smoking Man page
spec Man page Source code
sroc Man page Source code
sroc.phm Man page Source code
sroc.reitsma Man page Source code
sroc2 Source code
srocphm Source code
summary.SummaryPts Man page Source code
summary.madauni Man page Source code
summary.madauni-class Man page
summary.phm Man page Source code
summary.reitsma Man page Source code
talpha Man page Source code
trafo Source code
vcov.madauni Man page Source code
vcov.phm Source code
vcov.reitsma Source code

Files

DESCRIPTION
NAMESPACE
R
R/AUC.R
R/ROCellipse.R
R/SummaryPoints.R
R/basics.R
R/crosshair.R
R/forest.R
R/madad.R
R/madauni.R
R/mslSROC.R
R/phm.R
R/reitsma.R
R/reitsmaGibbs.R
R/reitsmaMCMC.R
R/rsSROC.R
R/sroc.R
R/t_alpha.R
build
build/vignette.rds
data
data/AuditC.rda
data/Dementia.rda
data/IAQ.rda
data/SAQ.rda
data/smoking.rda
inst
inst/doc
inst/doc/mada.R
inst/doc/mada.Rnw
inst/doc/mada.pdf
man
man/AUC.Rd
man/CIrho.Rd
man/ROCellipse.Rd
man/SummaryPts.Rd
man/cochran.Q.Rd
man/crosshair.Rd
man/forest.Rd
man/mada-data.Rd
man/mada-package.Rd
man/madad.Rd
man/madauni-class.Rd
man/madauni.Rd
man/mslSROC.Rd
man/phm-class.Rd
man/phm.Rd
man/reitsma-class.Rd
man/reitsma.Rd
man/rsSROC.Rd
man/sens.Rd
man/talpha.Rd
vignettes
vignettes/mada.Rnw
vignettes/mada.bib
mada documentation built on May 21, 2017, 1:10 a.m.