memgene: Spatial pattern detection in genetic distance data

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MEMGENE software can detect relatively small reductions in the amount of gene flow across space. By focusing on only the spatial component of genetic variation, MEMGENE has applications in landscape genetics where the movement and dispersal of organisms are studied using neutral genetic variation.

Author
Pedro Peres-Neto, Paul Galpern
Date of publication
2014-03-19 22:45:58
Maintainer
Paul Galpern <pgalpern@ucalgary.ca>
License
GPL (>= 2)
Version
0.12

View on R-Forge

Man pages

codomToPropShared
Find proportion of shared alleles genetic distances from a...
memgene-package
Spatial pattern detection in genetic distance data
mgForward
Forward selection of MEM eigenvectors against genetic...
mgMap
Visualization of MEMGENE variables
mgMEM
Extraction of MEM eigenvectors given distances among sampling...
mgQuick
MEMGENE analysis of genetic distance data (main interface for...
mgRDA
Extraction of MEMGENE variables using redundancy analysis...
mgVarPart
Variation partitioning using MEMGENE variables (experimental)

Files in this package

memgene/DESCRIPTION
memgene/NAMESPACE
memgene/R
memgene/R/codomToPropShared.R
memgene/R/mgForward.R
memgene/R/mgMEM.R
memgene/R/mgMap.R
memgene/R/mgQuick.R
memgene/R/mgRDA.R
memgene/R/mgVarPart.R
memgene/build
memgene/build/vignette.rds
memgene/inst
memgene/inst/doc
memgene/inst/doc/memgeneTutorial.R
memgene/inst/doc/memgeneTutorial.Rnw
memgene/inst/doc/memgeneTutorial.pdf
memgene/inst/extdata
memgene/inst/extdata/barrier.asc
memgene/inst/extdata/barrier.csv
memgene/inst/extdata/caribou.csv
memgene/inst/extdata/fragmented.asc
memgene/inst/extdata/fragmented.csv
memgene/inst/extdata/panmixia.csv
memgene/inst/extdata/radial.asc
memgene/inst/extdata/radial.csv
memgene/inst/extdata/river.asc
memgene/inst/extdata/river.csv
memgene/inst/extdata/uniform.csv
memgene/man
memgene/man/codomToPropShared.Rd
memgene/man/memgene-package.Rd
memgene/man/mgForward.Rd
memgene/man/mgMEM.Rd
memgene/man/mgMap.Rd
memgene/man/mgQuick.Rd
memgene/man/mgRDA.Rd
memgene/man/mgVarPart.Rd
memgene/vignettes
memgene/vignettes/memgeneTutorial.Rnw