Description Usage Arguments Details Value Author(s)
Internal function to get presence absence of descendent branches from a vector of node numbers. The descendents include the branch leading to the focal node (i.e. node defines the stem group no crown group)
1 | cladeIdentity(phy, nodeIDs, cladeMembersObj)
|
phy |
An object of class "phylo" (see ape package). |
nodeIDs |
Vector of node numbers (positive integers). |
cladeMembersObj |
Matrix of clade membership |
The function returns a matrix of unique presences given the selected node. If the selected nodes are nested then presences are only recorded for the least inclusive node.
matrix |
Matrix of unique presences for each node id |
Gavin Thomas
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