mpcbs: Multi-sample and Multiplatform CNV.

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Multi-sample and multi-platform copy number estimation.

Author
Nancy R. Zhang
Date of publication
None
Maintainer
Nancy R. Zhang <nzhang@stanford.edu>
License
What license is it under?
Version
1.1.1

View on R-Forge

Man pages

compute.var
Computes the variance of a piecewise constant time series...
cross.platform.consensus
Compute the cross platform consensus copy number given a...
mbic.mp
Computes the modified BIC for a given multi-platform...
merge.pos
Merge the Probe Positions from Multiple Microarray Platforms.
mpcbs
Multi-platform circular binary segmentation with user tuned...
mpcbs.example
Example copy number log ratio data from Illumina, Affymetrix,...
mpcbs-internal
Internal mpcbs Functions
mpcbs.mbic
Multi-platform circular binary segmentation with model...
mpcbs-package
Multi-platform circular binary segmentation for analysis of...
mpscan
Multi-platform scan using projected chi-square
plot.crossplatform
Simultaneously plots DNA copy number data from multiple...

Files in this package

mpcbs
mpcbs/NAMESPACE
mpcbs/data
mpcbs/data/datalist
mpcbs/data/mpcbs.example.rda
mpcbs/data/mpcbs.example.RData
mpcbs/R
mpcbs/R/mpcbs.R
mpcbs/R/merge.pos.R
mpcbs/R/zz.R
mpcbs/R/mpscan.R
mpcbs/R/internal.r
mpcbs/R/compute.var.R
mpcbs/R/mbic.mp.R
mpcbs/R/mpcbs.mbic.R
mpcbs/R/plot.crossplatform.R
mpcbs/R/cross.platform.consensus.R
mpcbs/inst
mpcbs/inst/NEWS
mpcbs/DESCRIPTION
mpcbs/man
mpcbs/man/mpcbs.mbic.Rd
mpcbs/man/compute.var.Rd
mpcbs/man/mpcbs.example.Rd
mpcbs/man/mpscan.Rd
mpcbs/man/mpcbs.Rd
mpcbs/man/merge.pos.Rd
mpcbs/man/cross.platform.consensus.Rd
mpcbs/man/plot.crossplatform.Rd
mpcbs/man/mbic.mp.Rd
mpcbs/man/mpcbs-package.Rd
mpcbs/man/mpcbs-internal.Rd
mpcbs/src
mpcbs/src/msscan.c