mpmi: Mixed-pair mutual information estimators

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Uses a kernel smoothing approach to calculate Mutual Information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Uses a nonparametric bias correction giving Bias Corrected Mutual Information (BCMI). Implemented efficiently in Fortran 95 with OpenMP and suited to large genomic datasets.

Author
Chris Pardy
Date of publication
2013-11-05 03:38:02
Maintainer
Chris Pardy <cpardy@unsw.edu.au>
License
GPL-3
Version
0.4
URLs

View on R-Forge

Man pages

cmi
Calculate BCMI between a set of continuous variables
cts
A group of simulated continuous variables
disc
A group of simulated categorical (discrete) variables
dmi
Calculate BCMI for categorical (discrete) data
mmi
Calculate mixed-pair BCMI between a set of continuous...
mp
Matrix Plot

Files in this package

mpmi/COPYING
mpmi/DESCRIPTION
mpmi/NAMESPACE
mpmi/NEWS
mpmi/R
mpmi/R/cmi.R
mpmi/R/cminjk.R
mpmi/R/dmif.R
mpmi/R/dpikSafe.R
mpmi/R/mmi.R
mpmi/R/mminjk.R
mpmi/R/mp.R
mpmi/build
mpmi/build/vignette.rds
mpmi/data
mpmi/data/mpmidata.RData
mpmi/inst
mpmi/inst/doc
mpmi/inst/doc/Vignette.R
mpmi/inst/doc/Vignette.Rnw
mpmi/inst/doc/Vignette.pdf
mpmi/man
mpmi/man/cmi.Rd
mpmi/man/cts.Rd
mpmi/man/disc.Rd
mpmi/man/dmi.Rd
mpmi/man/mmi.Rd
mpmi/man/mp.Rd
mpmi/src
mpmi/src/10iface.f95
mpmi/src/Makevars
mpmi/src/cmi.f95
mpmi/src/cminjk.f95
mpmi/src/dmi.f95
mpmi/src/iface.mod
mpmi/src/mmi.f95
mpmi/src/mminjk.f95
mpmi/src/nawrap.c
mpmi/vignettes
mpmi/vignettes/Vignette.Rnw