mpmi: Mixed-pair mutual information estimators
Version 0.4

Uses a kernel smoothing approach to calculate Mutual Information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Uses a nonparametric bias correction giving Bias Corrected Mutual Information (BCMI). Implemented efficiently in Fortran 95 with OpenMP and suited to large genomic datasets.

AuthorChris Pardy
Date of publication2013-11-05 03:38:02
MaintainerChris Pardy <cpardy@unsw.edu.au>
LicenseGPL-3
Version0.4
URL http://r-forge.r-project.org/projects/mpmi/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mpmi", repos="http://R-Forge.R-project.org")

Popular man pages

cmi: Calculate BCMI between a set of continuous variables
cts: A group of simulated continuous variables
disc: A group of simulated categorical (discrete) variables
dmi: Calculate BCMI for categorical (discrete) data
mmi: Calculate mixed-pair BCMI between a set of continuous...
mp: Matrix Plot
See all...

All man pages Function index File listing

Man pages

cmi: Calculate BCMI between a set of continuous variables
cts: A group of simulated continuous variables
disc: A group of simulated categorical (discrete) variables
dmi: Calculate BCMI for categorical (discrete) data
mmi: Calculate mixed-pair BCMI between a set of continuous...
mp: Matrix Plot

Functions

Files

COPYING
DESCRIPTION
NAMESPACE
NEWS
R
R/cmi.R
R/cminjk.R
R/dmif.R
R/dpikSafe.R
R/mmi.R
R/mminjk.R
R/mp.R
build
build/vignette.rds
data
data/mpmidata.RData
inst
inst/doc
inst/doc/Vignette.R
inst/doc/Vignette.Rnw
inst/doc/Vignette.pdf
man
man/cmi.Rd
man/cts.Rd
man/disc.Rd
man/dmi.Rd
man/mmi.Rd
man/mp.Rd
src
src/10iface.f95
src/Makevars
src/cmi.f95
src/cminjk.f95
src/dmi.f95
src/iface.mod
src/mmi.f95
src/mminjk.f95
src/nawrap.c
vignettes
vignettes/Vignette.Rnw
mpmi documentation built on May 21, 2017, 3:41 a.m.

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