msap: Statistical analysis for Methylation-sensitive Amplification Polymorphism data
Version 1.1.9

Statistical Analyses of Methylation-sensitive Amplification Polymorphism (MSAP) assays.

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AuthorAndres Perez-Figueroa [aut, cre]
Date of publication2015-11-09 06:07:43
MaintainerAndres Perez-Figueroa <anpefi@uvigo.es>
LicenseGPL (>= 2)
Version1.1.9
URL http://msap.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("msap", repos="http://R-Forge.R-project.org")

Man pages

methStatusEval: classify a locus as either MSL or NML.
msap: Diversity analysis of MSAP data
pcoa: Principal Coordinate Analyses
polymorphic: Checks polymorphic state
repMet: Report methylation levels
rmsap-package: Statistical Analyses for Methylation Sensitive Amplification...
shannon: Shannon Index of phenotypic diversity

Functions

diffAmova Source code
edgeCol Source code
methStatusEval Man page Source code
msap Man page Source code
pcoa Man page Source code
polymorphic Man page Source code
redundant Source code
repMet Man page Source code
rmsap-package Man page
shannon Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/diffAmova.R
R/methStatusEval.R
R/msap.R
R/pcoa.R
R/polymorphic.R
R/redundant.R
R/repMet.R
R/shannon.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/msap.R
inst/doc/msap.Rnw
inst/doc/msap.pdf
man
man/methStatusEval.Rd
man/msap.Rd
man/pcoa.Rd
man/polymorphic.Rd
man/repMet.Rd
man/rmsap-package.Rd
man/shannon.Rd
vignettes
vignettes/csvfile.png
vignettes/datafile.png
vignettes/example.csv
vignettes/msap.Rnw
msap documentation built on May 21, 2017, 4:14 a.m.