mtcreator: Creating MAGE-TAB files using mtcreator

In mtcreator: Creating MAGE-TAB files using mtcreator

Description

This package contains a program that supports users in creating files to comply the MIAME-standard compliant format MAGE-TAB. This format enables the user to upload his high dimensional and related metadata to the public database Array Express. The upload is required before you publish the data or results that has been generated using the data.

Usage

mtcreator( interact = FALSE,
              rawbool = FALSE,
              rawlocation = ".",
              expressionset,
              output_path = "",
              ...)

Arguments

interact	logical, use interactive mode or command line call.
rawbool	use rawdata or not
rawlocation	location of the raw data
expressionset	name of the expressionset in your workspace
output_path	path from current location to the folder where the programs output will be placed
...	additional input parameters(not yet implemented, will be available in a future version)

Details

The call runs the whole procedure. The files have to be checked afterwards manually

Author(s)

Fabian Grandke <[e-mail]>,

References

http://mtcreator.r-forge.r-project.org/

Examples

## Not run: 
  mtcreator(expressionset = test,output_path="./out")

## End(Not run)

mtcreator documentation built on May 2, 2019, 5:50 p.m.