mzmatch.ipeak.graphics.PeakMLToTIC: mzmatch.ipeak.graphics.PeakMLToTIC

In mzmatch.R: mzmatch and PeakML integration for XCMS.

Description

Creates Total Ion Current graphs from the given PeakML file.

Usage

mzmatch.ipeak.graphics.PeakMLToTIC(JHeapSize=1425, i, o, width, height, h, v)

Arguments

JHeapSize	Amount of RAM memory in megabytes, which should be reserved by the Java virtual machine. The default value is 1425 megabytes.
i	The input file in the PeakML format. When this option is not set, the input is read from the standard input.
o	The output file for the graph(s). This option is required to be set.
width	The width of a graph.
height	The height of a graph.
h	When this is set, the help is shown.
v	When this is set, the progress is shown on the standard output.

Details

Creates Total Ion Current graphs from the given PeakML file. The contents is analyzed and correctly summed to get to the real TIC. When the file contains multiple measurements, a seperate TIC is made for each measurement.

Value

This function returns no value.

Author(s)

RA Scheltema ([e-mail])

References

0. PeakML/mzMatch - a file format, Java library, R library and tool-chain for mass spectrometry data analysis. In preparation.

See Also

PeakML.xcms.read

mzmatch.R documentation built on May 31, 2017, 4:31 a.m.