R/raw_data.R

In nclRcourses: Functions for R courses at Newcastle University

#' Raw and post processed data
#' 
#' This data comes from Cockell et al., 2013.
#' \url{https://github.com/csgillespie/illumina-analysis/}
#' @aliases analysis_ready_data raw_data
#' @name yeast_long
#' @docType data
#' @usage data(yeast_long)
#' @references Cockell, S, Bashton, M, Gillespie, CS. 
#' Bioconductor tools for microarray data analysis. 
#' In: Microarray Image and Data Analysis: Theory and Practice. 
#' CRC Press.
NULL

# library(lumi)
# raw_data = lumiR.batch("~/Downloads/lumi_raw_data.txt")
# vst_data = lumiT(raw_data, method="vst")
# rsn_data = lumiN(vst_data, method="rsn")
# analysis_ready_data = lumiQ(rsn_data)
#