nea: Network Enrichment Analysis
Version 0.1.3

Enrichment of gene sets on networks.

AuthorFlorian Markowetz
Date of publicationNone
MaintainerFlorian Markowetz <florian@markowetzlab.org>
LicenseGPL (>=2)
Version0.1.3
URL http://www.markowetzlab.org
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("nea", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

create.network: Create networks
dist.graph: Distances on graph
generator: Small helper functions
Knet: K-function on networks
nea-package: Network Enrichment Analysis
set.vertex.attributes: Get/set more than one vertex attribute in an igraph object
spread.hits: Spread hits over a network
See all...

All man pages Function index File listing

Man pages

create.network: Create networks
dist.graph: Distances on graph
generator: Small helper functions
Knet: K-function on networks
nea-package: Network Enrichment Analysis
set.vertex.attributes: Get/set more than one vertex attribute in an igraph object
spread.hits: Spread hits over a network

Functions

GOnodeAnno Man page Source code
Knet Man page Source code
Knet.fct Man page Source code
create.grid Man page Source code
create.network Man page Source code
dist.graph Man page Source code
generator Man page Source code
get.all.vertex.attributes Man page Source code
graph.diffusion Man page Source code
is.wholenumber Man page Source code
my.as.igraph.vs Man page Source code
my.mget Man page Source code
nea Man page
nea-package Man page
panel.cor Man page Source code
panel.smoothscatter Man page Source code
permute.hits Man page Source code
plotKnet Man page Source code
rank.hits Source code
read.delim.BioGRID Man page Source code
set.vertex.attributes Man page Source code
spread.hits Man page Source code
sumInDistBins Man page Source code

Files

R
R/nea.R
NAMESPACE
DESCRIPTION
man
man/create.network.Rd
man/generator.Rd
man/nea-package.Rd
man/set.vertex.attributes.Rd
man/dist.graph.Rd
man/Knet.Rd
man/spread.hits.Rd
nea documentation built on May 21, 2017, 3:12 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.