needleman.wunsch: Needleman Wunsch computation
Version 1.5

Several tools for Needleman Wunsch of global and semi-global alignments.

AuthorKristian Hovde Liland
Date of publication2013-09-27 11:47:21
MaintainerKristian Hovde Liland <kristian.liland@umb.no>
LicenseGPL2
Version1.5
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("needleman.wunsch", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

char2int: Character to integer.
needleman.wunsch-package: Needleman-Wunsch score
nw: Needleman-Wunsch.
nw.sat.quer: Needleman-Wunsch for many sequenes.
nw.sg: Semi-global Needleman-Wunsch.
nw.sg.mult: Semi-global Needleman-Wunsch for multiple sequenes.
See all...

All man pages Function index File listing

Man pages

char2int: Character to integer.
needleman.wunsch-package: Needleman-Wunsch score
nw: Needleman-Wunsch.
nw.sat.quer: Needleman-Wunsch for many sequenes.
nw.sg: Semi-global Needleman-Wunsch.
nw.sg.mult: Semi-global Needleman-Wunsch for multiple sequenes.

Functions

char2int Man page Source code
needleman.wunsch Man page
needleman.wunsch-package Man page
nw Man page Source code
nw.sat.quer Man page Source code
nw.sg Man page Source code
nw.sg.mult Man page Source code
nws Man page Source code
nws.sat.quer Man page Source code
nws.sg Man page Source code
nws.sg.mult Man page Source code
qnw Man page Source code
qnw.sat.quer Man page Source code
qnw.sg Man page Source code
qnw.sg.mult Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/nw.R
man
man/char2int.Rd
man/needleman.wunsch-package.Rd
man/nw.Rd
man/nw.sat.quer.Rd
man/nw.sg.Rd
man/nw.sg.mult.Rd
src
src/Makevars
src/Makevars.win
src/nw.cpp
src/nw_sat_quer.cpp
src/nw_sg.cpp
src/nw_sg_mult.cpp
src/nws.cpp
src/nws_sat_quer.cpp
src/nws_sg.cpp
src/nws_sg_mult.cpp
src/qnw.cpp
src/qnw_sat_quer.cpp
src/qnw_sg.cpp
src/qnw_sg_mult.cpp
needleman.wunsch documentation built on May 21, 2017, 12:23 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.