needleman.wunsch: Needleman Wunsch computation

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Several tools for Needleman Wunsch of global and semi-global alignments.

Author
Kristian Hovde Liland
Date of publication
2013-09-27 11:47:21
Maintainer
Kristian Hovde Liland <kristian.liland@umb.no>
License
GPL2
Version
1.5

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Man pages

char2int
Character to integer.
needleman.wunsch-package
Needleman-Wunsch score
nw
Needleman-Wunsch.
nw.sat.quer
Needleman-Wunsch for many sequenes.
nw.sg
Semi-global Needleman-Wunsch.
nw.sg.mult
Semi-global Needleman-Wunsch for multiple sequenes.

Files in this package

needleman.wunsch/DESCRIPTION
needleman.wunsch/NAMESPACE
needleman.wunsch/R
needleman.wunsch/R/nw.R
needleman.wunsch/man
needleman.wunsch/man/char2int.Rd
needleman.wunsch/man/needleman.wunsch-package.Rd
needleman.wunsch/man/nw.Rd
needleman.wunsch/man/nw.sat.quer.Rd
needleman.wunsch/man/nw.sg.Rd
needleman.wunsch/man/nw.sg.mult.Rd
needleman.wunsch/src
needleman.wunsch/src/Makevars
needleman.wunsch/src/Makevars.win
needleman.wunsch/src/nw.cpp
needleman.wunsch/src/nw_sat_quer.cpp
needleman.wunsch/src/nw_sg.cpp
needleman.wunsch/src/nw_sg_mult.cpp
needleman.wunsch/src/nws.cpp
needleman.wunsch/src/nws_sat_quer.cpp
needleman.wunsch/src/nws_sg.cpp
needleman.wunsch/src/nws_sg_mult.cpp
needleman.wunsch/src/qnw.cpp
needleman.wunsch/src/qnw_sat_quer.cpp
needleman.wunsch/src/qnw_sg.cpp
needleman.wunsch/src/qnw_sg_mult.cpp