nwfscSurveyCode: What the package does (short line)
Version 1.0

More about what it does (maybe more than one line)

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AuthorAllan Hicks
Date of publication2013-09-05 23:18:32
MaintainerAllan Hicks <allan.hicks@noaa.gov>
LicenseWhat license is it under?
Version1.0
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("nwfscSurveyCode", repos="http://R-Forge.R-project.org")

Man pages

createStrataDF.fn: create a strata file for EWC functions
DesignBasedEstBiomass.EWC.fn: Calculate yearly biomass estimates
GetAgesExcel.fn: Reads in age data from Excel file and returns age frequencies...
GetAges.fn: Reads in age data and returns age frequencies in SS3 format
GetLFs.fn: Reads in LF data and returns length frequencies in SS3 format
GetLFsFromExcel.fn: Reads in LF data and returns length frequencies in SS3 format
GetTotalBiomassExcel.fn: Output the biomass in SS3 format, reading in from Excel file
GetTotalBiomass.fn: Output the biomass in SS3 format, reading in from a csv file
nwfscSurveyCode-package: Functions used to analyze NWFSC survey data and create input...
plotBio.fn: Plot the biomass estimates with confidence interval
plotBioStrata.fn: Plot biomass estimates by strata with CI's
plotFreqData.fn: Plot age or length frequencies as bubble plots
plotFreqDataStrata.fn: Plot age or length frequencies by strata as bubble plots
plotLFs.fn: Plots frequency data (deprecated) and now should use...
plotSexRatio.fn: Plots the sex ratio by length bins
readDataFromExcel.fn: Read biomass data from Excel file
readInAgeComps.fn: Reads in age comps from a csv file provided by survey team
ReadInBiomass.EWC.fn: Read in the csv file of biomass observations
readInBiomass.fn: Read in the biomass estimates from csv file provided by...
readInExcelAgeComps.fn: Reads age comps from Excel file provided by survey team
readInExcelBiomass.fn: Read biomass from Excel file provided by survey team
readInExcelLengthComps.fn: Read in length comps from Excel file provided by survey team
readInLengthComps.fn: Read in length comps from a csv file
ReadInLengths.EWC.fn: Read in length data for the Early West Coast surveys.
SA3: Area of lat and depth boundaries
SS3AgeAtLen.fn: Calculates age-at-length to input into SS3
SS3Biomass.fn: Calculates yearly biomass for input into SS3
SS3LF.fn: Calculates length frequencies for input into SS3
SS3LFstrata.fn: Enumerates the length frequencies by strata
StrataAreas.fn: Determine strata area.
strataBiomass.fn: Enumerates biomass by strata
StrataFactors.fn: Strata factors by name
SurveyAgeAtLen.EWC.fn: Calculate and format age-at-length compositions
SurveyLFs.EWC.fn: Calculate length frequency compositions

Functions

DesignBasedEstBiomass.EWC.fn Man page Source code
GetAges.fn Man page Source code
GetAgesExcel.fn Man page Source code
GetLFs.fn Man page Source code
GetLFsFromExcel.fn Man page Source code
GetTotalBiomass.fn Man page Source code
GetTotalBiomassExcel.fn Man page Source code
ReadInBiomass.EWC.fn Man page Source code
ReadInLengths.EWC.fn Man page Source code
SA3 Man page
SS3AgeAtLen.fn Man page Source code
SS3Biomass.fn Man page Source code
SS3LF.fn Man page Source code
SS3LFstrata.fn Man page Source code
StrataAreas.fn Man page Source code
StrataFactors.fn Man page Source code
SurveyAgeAtLen.EWC.fn Man page Source code
SurveyLFs.EWC.fn Man page Source code
createStrataDF.fn Man page Source code
nwfscSurveyCode Man page
nwfscSurveyCode-package Man page
plotBio.fn Man page Source code
plotBioStrata.fn Man page Source code
plotFreqData.fn Man page Source code
plotFreqDataStrata.fn Man page Source code
plotLFs.fn Man page Source code
plotSexRatio.fn Man page Source code
readDataFromExcel.fn Man page Source code
readInAgeComps.fn Man page Source code
readInBiomass.fn Man page Source code
readInExcelAgeComps.fn Man page Source code
readInExcelBiomass.fn Man page Source code
readInExcelLengthComps.fn Man page Source code
readInLengthComps.fn Man page Source code
strataBiomass.fn Man page Source code
updateSurveyCode Source code

Files

DESCRIPTION
NAMESPACE
R
R/DesignBasedEstBiomass.EWC.fn.R
R/GetAges.fn.R
R/GetAgesExcel.fn.R
R/GetLFs.fn.R
R/GetLFsFromExcel.fn.R
R/GetTotalBiomass.fn.R
R/GetTotalBiomassExcel.fn.R
R/ReadInBiomass.EWC.fn.R
R/ReadInLengths.EWC.fn.R
R/SS3AgeAtLen.fn.R
R/SS3Biomass.fn.R
R/SS3LF.fn.R
R/SS3LFstrata.fn.R
R/StrataAreas.fn.R
R/StrataFactors.fn.R
R/SurveyAgeAtLen.EWC.fn.R
R/SurveyLFs.EWC.fn.R
R/createStrataDF.fn.R
R/plotBio.fn.R
R/plotBioStrata.fn.R
R/plotFreqData.fn.R
R/plotFreqDataStrata.fn.R
R/plotLFs.fn.R
R/plotSexRatio.fn.R
R/readDataFromExcel.fn.R
R/readInAgeComps.fn.R
R/readInBiomass.fn.R
R/readInExcelAgeComps.fn.R
R/readInExcelBiomass.fn.R
R/readInExcelLengthComps.fn.R
R/readInLengthComps.fn.R
R/strataBiomass.fn.R
R/updateSurveyCode.R
data
data/SA3.rda
man
man/DesignBasedEstBiomass.EWC.fn.Rd
man/GetAges.fn.Rd
man/GetAgesExcel.fn.Rd
man/GetLFs.fn.Rd
man/GetLFsFromExcel.fn.Rd
man/GetTotalBiomass.fn.Rd
man/GetTotalBiomassExcel.fn.Rd
man/ReadInBiomass.EWC.fn.Rd
man/ReadInLengths.EWC.fn.Rd
man/SA3.Rd
man/SS3AgeAtLen.fn.Rd
man/SS3Biomass.fn.Rd
man/SS3LF.fn.Rd
man/SS3LFstrata.fn.Rd
man/StrataAreas.fn.Rd
man/StrataFactors.fn.Rd
man/SurveyAgeAtLen.EWC.fn.Rd
man/SurveyLFs.EWC.fn.Rd
man/createStrataDF.fn.Rd
man/nwfscSurveyCode-package.Rd
man/plotBio.fn.Rd
man/plotBioStrata.fn.Rd
man/plotFreqData.fn.Rd
man/plotFreqDataStrata.fn.Rd
man/plotLFs.fn.Rd
man/plotSexRatio.fn.Rd
man/readDataFromExcel.fn.Rd
man/readInAgeComps.fn.Rd
man/readInBiomass.fn.Rd
man/readInExcelAgeComps.fn.Rd
man/readInExcelBiomass.fn.Rd
man/readInExcelLengthComps.fn.Rd
man/readInLengthComps.fn.Rd
man/strataBiomass.fn.Rd
nwfscSurveyCode documentation built on May 21, 2017, 1:29 a.m.