nwfscSurveyCode: What the package does (short line)

More about what it does (maybe more than one line)

AuthorAllan Hicks
Date of publication2013-09-05 23:18:32
MaintainerAllan Hicks <allan.hicks@noaa.gov>
LicenseWhat license is it under?
Version1.0

View on R-Forge

Man pages

createStrataDF.fn: create a strata file for EWC functions

DesignBasedEstBiomass.EWC.fn: Calculate yearly biomass estimates

GetAgesExcel.fn: Reads in age data from Excel file and returns age frequencies...

GetAges.fn: Reads in age data and returns age frequencies in SS3 format

GetLFs.fn: Reads in LF data and returns length frequencies in SS3 format

GetLFsFromExcel.fn: Reads in LF data and returns length frequencies in SS3 format

GetTotalBiomassExcel.fn: Output the biomass in SS3 format, reading in from Excel file

GetTotalBiomass.fn: Output the biomass in SS3 format, reading in from a csv file

nwfscSurveyCode-package: Functions used to analyze NWFSC survey data and create input...

plotBio.fn: Plot the biomass estimates with confidence interval

plotBioStrata.fn: Plot biomass estimates by strata with CI's

plotFreqData.fn: Plot age or length frequencies as bubble plots

plotFreqDataStrata.fn: Plot age or length frequencies by strata as bubble plots

plotLFs.fn: Plots frequency data (deprecated) and now should use...

plotSexRatio.fn: Plots the sex ratio by length bins

readDataFromExcel.fn: Read biomass data from Excel file

readInAgeComps.fn: Reads in age comps from a csv file provided by survey team

ReadInBiomass.EWC.fn: Read in the csv file of biomass observations

readInBiomass.fn: Read in the biomass estimates from csv file provided by...

readInExcelAgeComps.fn: Reads age comps from Excel file provided by survey team

readInExcelBiomass.fn: Read biomass from Excel file provided by survey team

readInExcelLengthComps.fn: Read in length comps from Excel file provided by survey team

readInLengthComps.fn: Read in length comps from a csv file

ReadInLengths.EWC.fn: Read in length data for the Early West Coast surveys.

SA3: Area of lat and depth boundaries

SS3AgeAtLen.fn: Calculates age-at-length to input into SS3

SS3Biomass.fn: Calculates yearly biomass for input into SS3

SS3LF.fn: Calculates length frequencies for input into SS3

SS3LFstrata.fn: Enumerates the length frequencies by strata

StrataAreas.fn: Determine strata area.

strataBiomass.fn: Enumerates biomass by strata

StrataFactors.fn: Strata factors by name

SurveyAgeAtLen.EWC.fn: Calculate and format age-at-length compositions

SurveyLFs.EWC.fn: Calculate length frequency compositions

Files in this package

nwfscSurveyCode/DESCRIPTION
nwfscSurveyCode/NAMESPACE
nwfscSurveyCode/R
nwfscSurveyCode/R/DesignBasedEstBiomass.EWC.fn.R nwfscSurveyCode/R/GetAges.fn.R nwfscSurveyCode/R/GetAgesExcel.fn.R nwfscSurveyCode/R/GetLFs.fn.R nwfscSurveyCode/R/GetLFsFromExcel.fn.R nwfscSurveyCode/R/GetTotalBiomass.fn.R nwfscSurveyCode/R/GetTotalBiomassExcel.fn.R nwfscSurveyCode/R/ReadInBiomass.EWC.fn.R nwfscSurveyCode/R/ReadInLengths.EWC.fn.R nwfscSurveyCode/R/SS3AgeAtLen.fn.R nwfscSurveyCode/R/SS3Biomass.fn.R nwfscSurveyCode/R/SS3LF.fn.R nwfscSurveyCode/R/SS3LFstrata.fn.R nwfscSurveyCode/R/StrataAreas.fn.R nwfscSurveyCode/R/StrataFactors.fn.R nwfscSurveyCode/R/SurveyAgeAtLen.EWC.fn.R nwfscSurveyCode/R/SurveyLFs.EWC.fn.R nwfscSurveyCode/R/createStrataDF.fn.R nwfscSurveyCode/R/plotBio.fn.R nwfscSurveyCode/R/plotBioStrata.fn.R nwfscSurveyCode/R/plotFreqData.fn.R nwfscSurveyCode/R/plotFreqDataStrata.fn.R nwfscSurveyCode/R/plotLFs.fn.R nwfscSurveyCode/R/plotSexRatio.fn.R nwfscSurveyCode/R/readDataFromExcel.fn.R nwfscSurveyCode/R/readInAgeComps.fn.R nwfscSurveyCode/R/readInBiomass.fn.R nwfscSurveyCode/R/readInExcelAgeComps.fn.R nwfscSurveyCode/R/readInExcelBiomass.fn.R nwfscSurveyCode/R/readInExcelLengthComps.fn.R nwfscSurveyCode/R/readInLengthComps.fn.R nwfscSurveyCode/R/strataBiomass.fn.R nwfscSurveyCode/R/updateSurveyCode.R
nwfscSurveyCode/data
nwfscSurveyCode/data/SA3.rda
nwfscSurveyCode/man
nwfscSurveyCode/man/DesignBasedEstBiomass.EWC.fn.Rd nwfscSurveyCode/man/GetAges.fn.Rd nwfscSurveyCode/man/GetAgesExcel.fn.Rd nwfscSurveyCode/man/GetLFs.fn.Rd nwfscSurveyCode/man/GetLFsFromExcel.fn.Rd nwfscSurveyCode/man/GetTotalBiomass.fn.Rd nwfscSurveyCode/man/GetTotalBiomassExcel.fn.Rd nwfscSurveyCode/man/ReadInBiomass.EWC.fn.Rd nwfscSurveyCode/man/ReadInLengths.EWC.fn.Rd nwfscSurveyCode/man/SA3.Rd nwfscSurveyCode/man/SS3AgeAtLen.fn.Rd nwfscSurveyCode/man/SS3Biomass.fn.Rd nwfscSurveyCode/man/SS3LF.fn.Rd nwfscSurveyCode/man/SS3LFstrata.fn.Rd nwfscSurveyCode/man/StrataAreas.fn.Rd nwfscSurveyCode/man/StrataFactors.fn.Rd nwfscSurveyCode/man/SurveyAgeAtLen.EWC.fn.Rd nwfscSurveyCode/man/SurveyLFs.EWC.fn.Rd nwfscSurveyCode/man/createStrataDF.fn.Rd nwfscSurveyCode/man/nwfscSurveyCode-package.Rd nwfscSurveyCode/man/plotBio.fn.Rd nwfscSurveyCode/man/plotBioStrata.fn.Rd nwfscSurveyCode/man/plotFreqData.fn.Rd nwfscSurveyCode/man/plotFreqDataStrata.fn.Rd nwfscSurveyCode/man/plotLFs.fn.Rd nwfscSurveyCode/man/plotSexRatio.fn.Rd nwfscSurveyCode/man/readDataFromExcel.fn.Rd nwfscSurveyCode/man/readInAgeComps.fn.Rd nwfscSurveyCode/man/readInBiomass.fn.Rd nwfscSurveyCode/man/readInExcelAgeComps.fn.Rd nwfscSurveyCode/man/readInExcelBiomass.fn.Rd nwfscSurveyCode/man/readInExcelLengthComps.fn.Rd nwfscSurveyCode/man/readInLengthComps.fn.Rd nwfscSurveyCode/man/strataBiomass.fn.Rd

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