nwfscSurveyCode: What the package does (short line)

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Author
Allan Hicks
Date of publication
2013-09-05 23:18:32
Maintainer
Allan Hicks <allan.hicks@noaa.gov>
License
What license is it under?
Version
1.0

View on R-Forge

Man pages

createStrataDF.fn
create a strata file for EWC functions
DesignBasedEstBiomass.EWC.fn
Calculate yearly biomass estimates
GetAgesExcel.fn
Reads in age data from Excel file and returns age frequencies...
GetAges.fn
Reads in age data and returns age frequencies in SS3 format
GetLFs.fn
Reads in LF data and returns length frequencies in SS3 format
GetLFsFromExcel.fn
Reads in LF data and returns length frequencies in SS3 format
GetTotalBiomassExcel.fn
Output the biomass in SS3 format, reading in from Excel file
GetTotalBiomass.fn
Output the biomass in SS3 format, reading in from a csv file
nwfscSurveyCode-package
Functions used to analyze NWFSC survey data and create input...
plotBio.fn
Plot the biomass estimates with confidence interval
plotBioStrata.fn
Plot biomass estimates by strata with CI's
plotFreqData.fn
Plot age or length frequencies as bubble plots
plotFreqDataStrata.fn
Plot age or length frequencies by strata as bubble plots
plotLFs.fn
Plots frequency data (deprecated) and now should use...
plotSexRatio.fn
Plots the sex ratio by length bins
readDataFromExcel.fn
Read biomass data from Excel file
readInAgeComps.fn
Reads in age comps from a csv file provided by survey team
ReadInBiomass.EWC.fn
Read in the csv file of biomass observations
readInBiomass.fn
Read in the biomass estimates from csv file provided by...
readInExcelAgeComps.fn
Reads age comps from Excel file provided by survey team
readInExcelBiomass.fn
Read biomass from Excel file provided by survey team
readInExcelLengthComps.fn
Read in length comps from Excel file provided by survey team
readInLengthComps.fn
Read in length comps from a csv file
ReadInLengths.EWC.fn
Read in length data for the Early West Coast surveys.
SA3
Area of lat and depth boundaries
SS3AgeAtLen.fn
Calculates age-at-length to input into SS3
SS3Biomass.fn
Calculates yearly biomass for input into SS3
SS3LF.fn
Calculates length frequencies for input into SS3
SS3LFstrata.fn
Enumerates the length frequencies by strata
StrataAreas.fn
Determine strata area.
strataBiomass.fn
Enumerates biomass by strata
StrataFactors.fn
Strata factors by name
SurveyAgeAtLen.EWC.fn
Calculate and format age-at-length compositions
SurveyLFs.EWC.fn
Calculate length frequency compositions

Files in this package

nwfscSurveyCode/DESCRIPTION
nwfscSurveyCode/NAMESPACE
nwfscSurveyCode/R
nwfscSurveyCode/R/DesignBasedEstBiomass.EWC.fn.R
nwfscSurveyCode/R/GetAges.fn.R
nwfscSurveyCode/R/GetAgesExcel.fn.R
nwfscSurveyCode/R/GetLFs.fn.R
nwfscSurveyCode/R/GetLFsFromExcel.fn.R
nwfscSurveyCode/R/GetTotalBiomass.fn.R
nwfscSurveyCode/R/GetTotalBiomassExcel.fn.R
nwfscSurveyCode/R/ReadInBiomass.EWC.fn.R
nwfscSurveyCode/R/ReadInLengths.EWC.fn.R
nwfscSurveyCode/R/SS3AgeAtLen.fn.R
nwfscSurveyCode/R/SS3Biomass.fn.R
nwfscSurveyCode/R/SS3LF.fn.R
nwfscSurveyCode/R/SS3LFstrata.fn.R
nwfscSurveyCode/R/StrataAreas.fn.R
nwfscSurveyCode/R/StrataFactors.fn.R
nwfscSurveyCode/R/SurveyAgeAtLen.EWC.fn.R
nwfscSurveyCode/R/SurveyLFs.EWC.fn.R
nwfscSurveyCode/R/createStrataDF.fn.R
nwfscSurveyCode/R/plotBio.fn.R
nwfscSurveyCode/R/plotBioStrata.fn.R
nwfscSurveyCode/R/plotFreqData.fn.R
nwfscSurveyCode/R/plotFreqDataStrata.fn.R
nwfscSurveyCode/R/plotLFs.fn.R
nwfscSurveyCode/R/plotSexRatio.fn.R
nwfscSurveyCode/R/readDataFromExcel.fn.R
nwfscSurveyCode/R/readInAgeComps.fn.R
nwfscSurveyCode/R/readInBiomass.fn.R
nwfscSurveyCode/R/readInExcelAgeComps.fn.R
nwfscSurveyCode/R/readInExcelBiomass.fn.R
nwfscSurveyCode/R/readInExcelLengthComps.fn.R
nwfscSurveyCode/R/readInLengthComps.fn.R
nwfscSurveyCode/R/strataBiomass.fn.R
nwfscSurveyCode/R/updateSurveyCode.R
nwfscSurveyCode/data
nwfscSurveyCode/data/SA3.rda
nwfscSurveyCode/man
nwfscSurveyCode/man/DesignBasedEstBiomass.EWC.fn.Rd
nwfscSurveyCode/man/GetAges.fn.Rd
nwfscSurveyCode/man/GetAgesExcel.fn.Rd
nwfscSurveyCode/man/GetLFs.fn.Rd
nwfscSurveyCode/man/GetLFsFromExcel.fn.Rd
nwfscSurveyCode/man/GetTotalBiomass.fn.Rd
nwfscSurveyCode/man/GetTotalBiomassExcel.fn.Rd
nwfscSurveyCode/man/ReadInBiomass.EWC.fn.Rd
nwfscSurveyCode/man/ReadInLengths.EWC.fn.Rd
nwfscSurveyCode/man/SA3.Rd
nwfscSurveyCode/man/SS3AgeAtLen.fn.Rd
nwfscSurveyCode/man/SS3Biomass.fn.Rd
nwfscSurveyCode/man/SS3LF.fn.Rd
nwfscSurveyCode/man/SS3LFstrata.fn.Rd
nwfscSurveyCode/man/StrataAreas.fn.Rd
nwfscSurveyCode/man/StrataFactors.fn.Rd
nwfscSurveyCode/man/SurveyAgeAtLen.EWC.fn.Rd
nwfscSurveyCode/man/SurveyLFs.EWC.fn.Rd
nwfscSurveyCode/man/createStrataDF.fn.Rd
nwfscSurveyCode/man/nwfscSurveyCode-package.Rd
nwfscSurveyCode/man/plotBio.fn.Rd
nwfscSurveyCode/man/plotBioStrata.fn.Rd
nwfscSurveyCode/man/plotFreqData.fn.Rd
nwfscSurveyCode/man/plotFreqDataStrata.fn.Rd
nwfscSurveyCode/man/plotLFs.fn.Rd
nwfscSurveyCode/man/plotSexRatio.fn.Rd
nwfscSurveyCode/man/readDataFromExcel.fn.Rd
nwfscSurveyCode/man/readInAgeComps.fn.Rd
nwfscSurveyCode/man/readInBiomass.fn.Rd
nwfscSurveyCode/man/readInExcelAgeComps.fn.Rd
nwfscSurveyCode/man/readInExcelBiomass.fn.Rd
nwfscSurveyCode/man/readInExcelLengthComps.fn.Rd
nwfscSurveyCode/man/readInLengthComps.fn.Rd
nwfscSurveyCode/man/strataBiomass.fn.Rd