nwfscSurveyCode: What the package does (short line)

More about what it does (maybe more than one line)

AuthorAllan Hicks
Date of publication2013-09-05 23:18:32
MaintainerAllan Hicks <allan.hicks@noaa.gov>
LicenseWhat license is it under?
Version1.0

View on R-Forge

Man pages

createStrataDF.fn: create a strata file for EWC functions

DesignBasedEstBiomass.EWC.fn: Calculate yearly biomass estimates

GetAgesExcel.fn: Reads in age data from Excel file and returns age frequencies...

GetAges.fn: Reads in age data and returns age frequencies in SS3 format

GetLFs.fn: Reads in LF data and returns length frequencies in SS3 format

GetLFsFromExcel.fn: Reads in LF data and returns length frequencies in SS3 format

GetTotalBiomassExcel.fn: Output the biomass in SS3 format, reading in from Excel file

GetTotalBiomass.fn: Output the biomass in SS3 format, reading in from a csv file

nwfscSurveyCode-package: Functions used to analyze NWFSC survey data and create input...

plotBio.fn: Plot the biomass estimates with confidence interval

plotBioStrata.fn: Plot biomass estimates by strata with CI's

plotFreqData.fn: Plot age or length frequencies as bubble plots

plotFreqDataStrata.fn: Plot age or length frequencies by strata as bubble plots

plotLFs.fn: Plots frequency data (deprecated) and now should use...

plotSexRatio.fn: Plots the sex ratio by length bins

readDataFromExcel.fn: Read biomass data from Excel file

readInAgeComps.fn: Reads in age comps from a csv file provided by survey team

ReadInBiomass.EWC.fn: Read in the csv file of biomass observations

readInBiomass.fn: Read in the biomass estimates from csv file provided by...

readInExcelAgeComps.fn: Reads age comps from Excel file provided by survey team

readInExcelBiomass.fn: Read biomass from Excel file provided by survey team

readInExcelLengthComps.fn: Read in length comps from Excel file provided by survey team

readInLengthComps.fn: Read in length comps from a csv file

ReadInLengths.EWC.fn: Read in length data for the Early West Coast surveys.

SA3: Area of lat and depth boundaries

SS3AgeAtLen.fn: Calculates age-at-length to input into SS3

SS3Biomass.fn: Calculates yearly biomass for input into SS3

SS3LF.fn: Calculates length frequencies for input into SS3

SS3LFstrata.fn: Enumerates the length frequencies by strata

StrataAreas.fn: Determine strata area.

strataBiomass.fn: Enumerates biomass by strata

StrataFactors.fn: Strata factors by name

SurveyAgeAtLen.EWC.fn: Calculate and format age-at-length compositions

SurveyLFs.EWC.fn: Calculate length frequency compositions

Functions

createStrataDF.fn Man page
DesignBasedEstBiomass.EWC.fn Man page
GetAgesExcel.fn Man page
GetAges.fn Man page
GetLFs.fn Man page
GetLFsFromExcel.fn Man page
GetTotalBiomassExcel.fn Man page
GetTotalBiomass.fn Man page
nwfscSurveyCode Man page
nwfscSurveyCode-package Man page
plotBio.fn Man page
plotBioStrata.fn Man page
plotFreqData.fn Man page
plotFreqDataStrata.fn Man page
plotLFs.fn Man page
plotSexRatio.fn Man page
readDataFromExcel.fn Man page
readInAgeComps.fn Man page
ReadInBiomass.EWC.fn Man page
readInBiomass.fn Man page
readInExcelAgeComps.fn Man page
readInExcelBiomass.fn Man page
readInExcelLengthComps.fn Man page
readInLengthComps.fn Man page
ReadInLengths.EWC.fn Man page
SA3 Man page
SS3AgeAtLen.fn Man page
SS3Biomass.fn Man page
SS3LF.fn Man page
SS3LFstrata.fn Man page
StrataAreas.fn Man page
strataBiomass.fn Man page
StrataFactors.fn Man page
SurveyAgeAtLen.EWC.fn Man page
SurveyLFs.EWC.fn Man page

Files

nwfscSurveyCode/DESCRIPTION
nwfscSurveyCode/NAMESPACE
nwfscSurveyCode/R
nwfscSurveyCode/R/DesignBasedEstBiomass.EWC.fn.R nwfscSurveyCode/R/GetAges.fn.R nwfscSurveyCode/R/GetAgesExcel.fn.R nwfscSurveyCode/R/GetLFs.fn.R nwfscSurveyCode/R/GetLFsFromExcel.fn.R nwfscSurveyCode/R/GetTotalBiomass.fn.R nwfscSurveyCode/R/GetTotalBiomassExcel.fn.R nwfscSurveyCode/R/ReadInBiomass.EWC.fn.R nwfscSurveyCode/R/ReadInLengths.EWC.fn.R nwfscSurveyCode/R/SS3AgeAtLen.fn.R nwfscSurveyCode/R/SS3Biomass.fn.R nwfscSurveyCode/R/SS3LF.fn.R nwfscSurveyCode/R/SS3LFstrata.fn.R nwfscSurveyCode/R/StrataAreas.fn.R nwfscSurveyCode/R/StrataFactors.fn.R nwfscSurveyCode/R/SurveyAgeAtLen.EWC.fn.R nwfscSurveyCode/R/SurveyLFs.EWC.fn.R nwfscSurveyCode/R/createStrataDF.fn.R nwfscSurveyCode/R/plotBio.fn.R nwfscSurveyCode/R/plotBioStrata.fn.R nwfscSurveyCode/R/plotFreqData.fn.R nwfscSurveyCode/R/plotFreqDataStrata.fn.R nwfscSurveyCode/R/plotLFs.fn.R nwfscSurveyCode/R/plotSexRatio.fn.R nwfscSurveyCode/R/readDataFromExcel.fn.R nwfscSurveyCode/R/readInAgeComps.fn.R nwfscSurveyCode/R/readInBiomass.fn.R nwfscSurveyCode/R/readInExcelAgeComps.fn.R nwfscSurveyCode/R/readInExcelBiomass.fn.R nwfscSurveyCode/R/readInExcelLengthComps.fn.R nwfscSurveyCode/R/readInLengthComps.fn.R nwfscSurveyCode/R/strataBiomass.fn.R nwfscSurveyCode/R/updateSurveyCode.R
nwfscSurveyCode/data
nwfscSurveyCode/data/SA3.rda
nwfscSurveyCode/man
nwfscSurveyCode/man/DesignBasedEstBiomass.EWC.fn.Rd nwfscSurveyCode/man/GetAges.fn.Rd nwfscSurveyCode/man/GetAgesExcel.fn.Rd nwfscSurveyCode/man/GetLFs.fn.Rd nwfscSurveyCode/man/GetLFsFromExcel.fn.Rd nwfscSurveyCode/man/GetTotalBiomass.fn.Rd nwfscSurveyCode/man/GetTotalBiomassExcel.fn.Rd nwfscSurveyCode/man/ReadInBiomass.EWC.fn.Rd nwfscSurveyCode/man/ReadInLengths.EWC.fn.Rd nwfscSurveyCode/man/SA3.Rd nwfscSurveyCode/man/SS3AgeAtLen.fn.Rd nwfscSurveyCode/man/SS3Biomass.fn.Rd nwfscSurveyCode/man/SS3LF.fn.Rd nwfscSurveyCode/man/SS3LFstrata.fn.Rd nwfscSurveyCode/man/StrataAreas.fn.Rd nwfscSurveyCode/man/StrataFactors.fn.Rd nwfscSurveyCode/man/SurveyAgeAtLen.EWC.fn.Rd nwfscSurveyCode/man/SurveyLFs.EWC.fn.Rd nwfscSurveyCode/man/createStrataDF.fn.Rd nwfscSurveyCode/man/nwfscSurveyCode-package.Rd nwfscSurveyCode/man/plotBio.fn.Rd nwfscSurveyCode/man/plotBioStrata.fn.Rd nwfscSurveyCode/man/plotFreqData.fn.Rd nwfscSurveyCode/man/plotFreqDataStrata.fn.Rd nwfscSurveyCode/man/plotLFs.fn.Rd nwfscSurveyCode/man/plotSexRatio.fn.Rd nwfscSurveyCode/man/readDataFromExcel.fn.Rd nwfscSurveyCode/man/readInAgeComps.fn.Rd nwfscSurveyCode/man/readInBiomass.fn.Rd nwfscSurveyCode/man/readInExcelAgeComps.fn.Rd nwfscSurveyCode/man/readInExcelBiomass.fn.Rd nwfscSurveyCode/man/readInExcelLengthComps.fn.Rd nwfscSurveyCode/man/readInLengthComps.fn.Rd nwfscSurveyCode/man/strataBiomass.fn.Rd

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