Man pages for nwfscSurveyCode
What the package does (short line)
| createStrataDF.fn | create a strata file for EWC functions |
| DesignBasedEstBiomass.EWC.fn | Calculate yearly biomass estimates |
| GetAgesExcel.fn | Reads in age data from Excel file and returns age frequencies... |
| GetAges.fn | Reads in age data and returns age frequencies in SS3 format |
| GetLFs.fn | Reads in LF data and returns length frequencies in SS3 format |
| GetLFsFromExcel.fn | Reads in LF data and returns length frequencies in SS3 format |
| GetTotalBiomassExcel.fn | Output the biomass in SS3 format, reading in from Excel file |
| GetTotalBiomass.fn | Output the biomass in SS3 format, reading in from a csv file |
| nwfscSurveyCode-package | Functions used to analyze NWFSC survey data and create input... |
| plotBio.fn | Plot the biomass estimates with confidence interval |
| plotBioStrata.fn | Plot biomass estimates by strata with CI's |
| plotFreqData.fn | Plot age or length frequencies as bubble plots |
| plotFreqDataStrata.fn | Plot age or length frequencies by strata as bubble plots |
| plotLFs.fn | Plots frequency data (deprecated) and now should use... |
| plotSexRatio.fn | Plots the sex ratio by length bins |
| readDataFromExcel.fn | Read biomass data from Excel file |
| readInAgeComps.fn | Reads in age comps from a csv file provided by survey team |
| ReadInBiomass.EWC.fn | Read in the csv file of biomass observations |
| readInBiomass.fn | Read in the biomass estimates from csv file provided by... |
| readInExcelAgeComps.fn | Reads age comps from Excel file provided by survey team |
| readInExcelBiomass.fn | Read biomass from Excel file provided by survey team |
| readInExcelLengthComps.fn | Read in length comps from Excel file provided by survey team |
| readInLengthComps.fn | Read in length comps from a csv file |
| ReadInLengths.EWC.fn | Read in length data for the Early West Coast surveys. |
| SA3 | Area of lat and depth boundaries |
| SS3AgeAtLen.fn | Calculates age-at-length to input into SS3 |
| SS3Biomass.fn | Calculates yearly biomass for input into SS3 |
| SS3LF.fn | Calculates length frequencies for input into SS3 |
| SS3LFstrata.fn | Enumerates the length frequencies by strata |
| StrataAreas.fn | Determine strata area. |
| strataBiomass.fn | Enumerates biomass by strata |
| StrataFactors.fn | Strata factors by name |
| SurveyAgeAtLen.EWC.fn | Calculate and format age-at-length compositions |
| SurveyLFs.EWC.fn | Calculate length frequency compositions |
