Man pages for phrapl
Phylogeography using Approximate Likelihood
| CalculateModelAverages | CalculateModelAverages |
| ConcatenateResults | ConcatenateResults |
| Data | Cached migrationArrays |
| GenerateMigrationArrayMap | GenerateMigrationArrayMap |
| GenerateMigrationIndividuals | Generate a migrationArray |
| GetPermutationWeightsAcrossSubsamples | Calculate tip label degeneracy weights for a set of trees |
| GridSearch | Computes AIC for a given model or models on a fixed set of... |
| MergeTrees | MergeTrees |
| MsIndividualParameters | MsIndividualParameters |
| phrapl-example | A description for applying phrapl to a test dataset |
| phrapl-internal | Internal phrapl Functions |
| phrapl-package | Phylogeographic analysis using approximated likelihoods |
| PlotModel | Create a 3D spinning plot for a given model |
| PrepSubsampling | Subsample tips from a tree |
| PrepSubsamplingFiles | Subsample tips from a tree |
| RunRaxml | RunRaxml |
| RunSeqConverter | RunSeqConverter |
| SaveMovie | This function converts a 3D tree plot into an animated gif,... |
