qtl.outbred: Interface for Genotype Probabilities from Outbred Intercross
Version 2013.05.03

The package calculates and imports genotype probabilities from outbred intercross designs into an R object. This allows fast scans for main effect QTL and two way interactions. Note to Linux users: On installation add the argument to the install.packages function: lib = paste(R.home(), '/library/', sep = '')

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AuthorRonnie Nelson and Xia Shen
Date of publication2013-09-20 11:18:01
MaintainerXia Shen <xia.shen@slu.se>
LicenseGPL-2
Version2013.05.03
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("qtl.outbred", repos="http://R-Forge.R-project.org")

Man pages

calc.prob: Calculate genotype probabilities for outbred intercrosses...
impo.prob: Import genotype probabilities into an existing cross object
plot_outbred: Plot LOD curves for outbred data
plot.outbred: Plot LOD curves for outbred data
qtl.outbred-package: Interface for Genotype Probabilities of Outbred Intercross
Scanone: Genome scan with a single QTL model

Functions

Scanone Man page
calc.prob Man page
impo.prob Man page
onAttach Source code
onLoad Source code
outbred Man page
plot.outbred Man page
plot_outbred Man page
qtl.outbred Man page
qtl.outbred-package Man page

Files

DESCRIPTION
NAMESPACE
R
R/outbred.R
inst
inst/CITATION
inst/Gout.coe
inst/Nettleblad_algorithm_source_code.cpp
inst/cnF2freq_unix.zip
inst/cnF2freq_windows.zip
inst/cnout
inst/doc
inst/doc/Sweave.sty
inst/doc/outbred-manual.pdf
inst/doc/outbred.R
inst/doc/outbred.Rnw
inst/doc/outbred.pdf
inst/doc/outbredmanual.pdf
inst/doc/pdfpages.dtx
inst/doc/pdfpages.ins
inst/doc/qtl.outbred.R
inst/doc/qtl.outbred.Rnw
inst/doc/qtl.outbred.pdf
inst/example_data.csv
inst/example_data.txt
inst/lp.pl
inst/lp2.pl
inst/mg.txt
inst/mi.txt
inst/mp.txt
inst/p_output_chrom_1.txt
inst/p_output_chrom_2.txt
man
man/Scanone.Rd
man/calc.prob.Rd
man/impo.prob.Rd
man/plot.outbred.Rd
man/plot_outbred.Rd
man/qtl.outbred-package.Rd
qtl.outbred documentation built on May 21, 2017, 3:31 a.m.