qtl.outbred: Interface for Genotype Probabilities from Outbred Intercross

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The package calculates and imports genotype probabilities from outbred intercross designs into an R object. This allows fast scans for main effect QTL and two way interactions. Note to Linux users: On installation add the argument to the install.packages function: lib = paste(R.home(), '/library/', sep = '')

Author
Ronnie Nelson and Xia Shen
Date of publication
2013-09-20 11:18:01
Maintainer
Xia Shen <xia.shen@slu.se>
License
GPL-2
Version
2013.05.03

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Man pages

calc.prob
Calculate genotype probabilities for outbred intercrosses...
impo.prob
Import genotype probabilities into an existing cross object
plot_outbred
Plot LOD curves for outbred data
plot.outbred
Plot LOD curves for outbred data
qtl.outbred-package
Interface for Genotype Probabilities of Outbred Intercross
Scanone
Genome scan with a single QTL model

Files in this package

qtl.outbred/DESCRIPTION
qtl.outbred/NAMESPACE
qtl.outbred/R
qtl.outbred/R/outbred.R
qtl.outbred/inst
qtl.outbred/inst/CITATION
qtl.outbred/inst/Gout.coe
qtl.outbred/inst/Nettleblad_algorithm_source_code.cpp
qtl.outbred/inst/cnF2freq_unix.zip
qtl.outbred/inst/cnF2freq_windows.zip
qtl.outbred/inst/cnout
qtl.outbred/inst/doc
qtl.outbred/inst/doc/Sweave.sty
qtl.outbred/inst/doc/outbred-manual.pdf
qtl.outbred/inst/doc/outbred.R
qtl.outbred/inst/doc/outbred.Rnw
qtl.outbred/inst/doc/outbred.pdf
qtl.outbred/inst/doc/outbredmanual.pdf
qtl.outbred/inst/doc/pdfpages.dtx
qtl.outbred/inst/doc/pdfpages.ins
qtl.outbred/inst/doc/qtl.outbred.R
qtl.outbred/inst/doc/qtl.outbred.Rnw
qtl.outbred/inst/doc/qtl.outbred.pdf
qtl.outbred/inst/example_data.csv
qtl.outbred/inst/example_data.txt
qtl.outbred/inst/lp.pl
qtl.outbred/inst/lp2.pl
qtl.outbred/inst/mg.txt
qtl.outbred/inst/mi.txt
qtl.outbred/inst/mp.txt
qtl.outbred/inst/p_output_chrom_1.txt
qtl.outbred/inst/p_output_chrom_2.txt
qtl.outbred/man
qtl.outbred/man/Scanone.Rd
qtl.outbred/man/calc.prob.Rd
qtl.outbred/man/impo.prob.Rd
qtl.outbred/man/plot.outbred.Rd
qtl.outbred/man/plot_outbred.Rd
qtl.outbred/man/qtl.outbred-package.Rd