related: related: an R package for analyzing pairwise relatedness data based on codominant molecular markers

Provides functions for calculating relatedness from codominant genetic data using any or all of seven estimators, and includes options for considering inbreeding and genotyping errors, and can estimate 95% confidence intervals. Also includes simulation options for comparing the performance of different estimators on a given data set and estimating the expected resolution given a particular data set.

AuthorJack Pew, Jinliang Wang, Paul Muir, and Tim Frasier
Date of publication2014-04-16 18:40:57
MaintainerTim Frasier <timothy.frasier@smu.ca>
LicenseGPL (>= 2)
Version0.8

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Files

DESCRIPTION
NAMESPACE
R
R/related.R
README
data
data/GenotypeData.rda
man
man/GenotypeData.Rd man/cleanuprvals.Rd man/coancestry.Rd man/compareestimators.Rd man/familysim.Rd man/readgenotypedata.Rd man/readrelatedoutput.Rd man/related-package.Rd
src
src/family_sim.c
src/ibdvariables.mod
src/related.f90
src/related.h
src/variables.mod
src/wangvariables.mod
vignettes
vignettes/related_tutorial.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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