related: related: an R package for analyzing pairwise relatedness data based on codominant molecular markers

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Provides functions for calculating relatedness from codominant genetic data using any or all of seven estimators, and includes options for considering inbreeding and genotyping errors, and can estimate 95% confidence intervals. Also includes simulation options for comparing the performance of different estimators on a given data set and estimating the expected resolution given a particular data set.

Author
Jack Pew, Jinliang Wang, Paul Muir, and Tim Frasier
Date of publication
2014-04-16 18:40:57
Maintainer
Tim Frasier <timothy.frasier@smu.ca>
License
GPL (>= 2)
Version
0.8

View on R-Forge

Man pages

cleanuprvals
Discard non-desired pairwise relatedness values.
coancestry
Calculate relatedness and inbreeding coefficients
compareestimators
Compare relatedness estimators.
familysim
Simulate related individuals
GenotypeData
Sample genotype data.
readgenotypedata
Read a file of genotype data into a data.frame
readrelatedoutput
Read Related output files into R data.frame objects
related-package
related: an R package for analyzing pairwise relatedness...

Files in this package

related/DESCRIPTION
related/NAMESPACE
related/R
related/R/related.R
related/README
related/data
related/data/GenotypeData.rda
related/man
related/man/GenotypeData.Rd
related/man/cleanuprvals.Rd
related/man/coancestry.Rd
related/man/compareestimators.Rd
related/man/familysim.Rd
related/man/readgenotypedata.Rd
related/man/readrelatedoutput.Rd
related/man/related-package.Rd
related/src
related/src/family_sim.c
related/src/ibdvariables.mod
related/src/related.f90
related/src/related.h
related/src/variables.mod
related/src/wangvariables.mod
related/vignettes
related/vignettes/related_tutorial.pdf