| A1 | HTLV-1 Fragment Length Data |
| estAbund | estimate Abundances from sonicated samples |
| estep | E-Step for Abundance Estimation |
| maxEM | maximum likelihood estimates relative abundances |
| maxEM.iter.control | iteration controls |
| mstep | M-step to maximize theta |
| phi.update.lframe | estimate phi |
| simFragment | Simple Fragment Length Distribution |
| simSonic | Simulate Sonicated Data |
| sonicLength.start-package | Calibration of Number of Length Variants |
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