splits: SPecies' LImits by Threshold Statistics

"splits" contains tools for delimiting species and automated taxonomy at multiple levels of biological organization (eg. DNA barcoding, morphometrics), both top-down (merging phylogenetic and phylogeographic methods) and bottom-up (single samples into >1 groups).

Author
Thomas Ezard, Tomochika Fujisawa and Tim Barraclough
Date of publication
2014-06-20 02:35:29
Maintainer
Thomas Ezard <T.Ezard@soton.ac.uk>
License
GPL (>= 2)
Version
1.0-19

View on R-Forge

Man pages

comp.delimit
Comparing the GMYC delimitation with an alternative...
ddwtGap
Identify the Number of Clusters in a Data Matrix.
dimReduct
Strip uninformative measurements
gmyc
Optimizes genetic clusters using the generalized mixed yule...
gmyc.support
Calculating AIC-based support values for the GMYC clusters
splits-defunct
Defunct functions in packaga splits
splits-package
SPecies LImits by Threshold Statistics
subsDiag
Apply two types of diagnostics to clustered data
test.tr
A test tree for use with gmyc.

Files in this package

splits/DESCRIPTION
splits/NAMESPACE
splits/R
splits/R/comp.delimit.R
splits/R/confset.gmyc.R
splits/R/ddwtGap.R
splits/R/dimReduct.R
splits/R/gmyc.R
splits/R/gmyc.support.R
splits/R/plot.gmyc.R
splits/R/remove.terminal.zeros.R
splits/R/spec.list.R
splits/R/subsDiag.R
splits/R/summary.gmyc.R
splits/data
splits/data/test.tr.rda
splits/man
splits/man/comp.delimit.Rd
splits/man/ddwtGap.Rd
splits/man/dimReduct.Rd
splits/man/gmyc.Rd
splits/man/gmyc.support.Rd
splits/man/splits-defunct.Rd
splits/man/splits-package.Rd
splits/man/subsDiag.Rd
splits/man/test.tr.Rd