stacomiR: Fish Migration Monitoring (stacomiR)

Graphical outputs and treatment for a database of fishway monitoring. It is a part of the STACOMI project developed in France by the ONEMA institute to centralize data obtained by fishway monitoring. Version 0.5.0 is available in French English and Spanish.

Author
Cedric Briand [aut, cre], Marion Legrand [aut]
Date of publication
2016-11-26 20:56:47
Maintainer
Cedric Briand <cedric.briand00@gmail.com>
License
GPL (>= 2)
Version
0.5.0

View on R-Forge

Man pages

barplot-BilanAnnuels-method
barplot method for object BilanAnnuels
b_carlot
An object of class Bilan_carlot-class with data loaded
bfDC
An object of class BilanFonctionnementDC-class with data...
bfDF
An object of class BilanFonctionnementDF-class with data...
bilA
An object of class BilaAnnuels-class with data loaded
bilAM
Annual migration of salmon by migradour
BilanAnnuels-class
Class "BilanAnnuels"
bilanArg
Silver eel migration in the Somme
BilanArgentee-class
Class "BilanArgentee"
Bilan_carlot-class
Class "Bilan_carlot"
BilanConditionEnv-class
class BilanConditionEnv simple output of one or several...
BilanEspeces-class
Class "BilanEspeces" Report of the species present at a...
bilanFonctionnementDC
An object of class BilanFonctionnementDC-class with data...
bilanFonctionnementDC_bM
An object of class BilanFonctionnementDC-class with data...
BilanFonctionnementDC-class
Class "BilanFonctionnementDC" Bilan du fonctionnement du...
bilanFonctionnementDF
An object of class BilanFonctionnementDF-class with data...
bilanFonctionnementDF_bM
An object of class BilanFonctionnementDF-class with data...
BilanFonctionnementDF-class
Class "BilanFonctionnementDF" Report fishway work
BilanMigration-class
Migration report for one DC, one species and one stage
BilanMigrationConditionEnv-class
Class "BilanMigrationConditionEnv"
BilanMigrationInterAnnuelle-class
Class "BilanMigrationInterAnnuelle"
BilanMigrationMult-class
Migration reports for multiple DC / species / stages
BilanMigrationPar-class
Migration report along with quantitative and qualitative...
bilanOperation
An object of class BilanOperation-class with data loaded
bilanOperation_bM
An object of class BilanOperation-class with data loaded
BilanOperation-class
Report on operations
Bilan_poids_moyen-class
Class "Bilan_poids_moyen"
Bilan_stades_pigm-class
Bilan class for pigment stage structure analysis (glass eel)
Bilan_taille-class
Class "Bilan_taille" Bilan class
bM_Arzal
An object of class bilanMigration with data loaded
bmi
An object of class BilanMigrationInterAnnuelle-class with...
bMM_Arzal
An object of class bilanMigrationMult with data loaded
calcmig
dataframe containing the default connection arguments the...
calcule
Generic method for calculations
calcule-BilanArgentee-method
Calcule method for BilanArgentee, this method will pass the...
calcule-Bilan_carlot-method
Calcule method for Bilan_carlot
calcule-BilanMigrationConditionEnv-method
Performs the calculations of environment conditions attached...
calcule-BilanMigration-method
calcule method for BilanMigration
calcule-BilanMigrationMult-method
calcule method for BilanMigrationMult
calcule-BilanMigrationPar-method
calcule methode
calcule-Bilan_taille-method
Calcule method for BilanTaille
charge
Generic method to load referentials
charge_avec_filtre
Generic method to load referentials, with filters from the...
charge_avec_filtre-RefMsg-method
Loading method for RefMsg referential objects
charge_avec_filtre-Refpar-method
Loading method for Repar referential objects searching only...
charge_avec_filtre-Refparqual-method
Loading method for Reparqual referential objects searching...
charge_avec_filtre-Refparquan-method
Loading method for Reparquan referential objects searching...
charge_avec_filtre-RefStades-method
Loading method for RefStades referential objects searching...
charge_avec_filtre-RefTaxon-method
Loading method for RefTaxon referential objects searching...
charge-BilanAnnuels-method
charge method for BilanAnnuels class
charge-BilanArgentee-method
charge method for BilanArgentee class
charge-Bilan_carlot-method
charge method for Bilan_carlot class
charge-BilanConditionEnv-method
charge method for BilanCondtionEnv class
charge-BilanEspeces-method
charge method for BilanEspeces verifies the content of...
charge-BilanFonctionnementDC-method
charge method for BilanFonctionnementDC
charge-BilanFonctionnementDF-method
charge method for BilanFonctionnementDF
charge-BilanMigrationInterAnnuelle-method
loading method for BilanMigrationInterannuelle class
charge-BilanMigration-method
charge method for BilanMigration
charge-BilanMigrationMult-method
charge method for BilanMigrationMult
charge-BilanOperation-method
charge method for BilanOperation
charge-Bilan_poids_moyen-method
charge method for Bilan_poids_moyen class
charge-Bilan_stades_pigm-method
Charge method for BilanStadePigm
charge-Bilan_taille-method
charge method for Bilan_taille
charge_complement
Generic method to load additional data
chargecomplement-methods
Methods for Function chargecomplement
charge_complement-Refparqual-method
Loads an additional dataset this method is loaded to obtain...
chargecsv
chargecsv loads the informations stored in c:/program...
charge-RefAnnee-method
Loading method for RefAnnee referential objects
charge-RefCheckBox-method
Loading method for ReCheckBox referential objects
charge-RefChoix-method
Loading method for Rechoice referential objects
charge-RefCoe-method
loads the coefficients for the period defined in class
charge-RefDC-method
Method to load the counting devices of the control station
charge-RefDF-method
Loading method for DF referential objects
charge-RefListe-method
Loading method for Refliste referential objects
charge-RefMsg-method
Loading method for RefMsg referential objects
charge-Refpar-method
Loading method for Repar referential objects
charge-Refparqual-method
Loading method for Reparqual referential objects
charge-Refparquan-method
Loading method for Reparquan referential objects
charge-RefStades-method
Loading method for RefStades referential objects
charge-RefStationMesure-method
Loading method for RefStationMesure referential object
charge-RefTaxon-method
Loading method for RefTaxon referential objects
charge-RefTextBox-method
Loading method for ReTextBox referential objects
choice
Generic method for choice (using the gwidget graphical...
choice_c
Generic method for manual choice
choice_c-BilanAnnuels-method
command line interface for BilanAnnuels-class
choice_c-BilanArgentee-method
command line interface for BilanArgentee class
choice_c-Bilan_carlot-method
command line interface for Bilan_carlot class
choice_c-BilanFonctionnementDC-method
command line interface for BilanFonctionnementDC class
choice_c-BilanFonctionnementDF-method
command line interface for BilanFonctionnementDF class
choice_c-BilanMigrationInterAnnuelle-method
command line interface for BilanMigrationInterAnnuelle class
choice_c-BilanMigration-method
command line interface for BilanMigration class
choice_c-BilanMigrationMult-method
command line interface for BilanMigrationMult class
choice_c-PasDeTempsJournalier-method
choice_c method for class PasDeTempsJournalier
choice_c-RefAnnee-method
choice method for RefAnnee referential from the command line
choice_c-RefDC-method
Command line interface to select a counting device
choice_c-RefDF-method
Command line interface to choose a fishway
choice_c-RefHorodate-method
Command line
choice_c-Refpar-method
Command line interface to select a parameter
choice_c-RefStades-method
choice_c method for RefStades
choice_c-RefTaxon-method
choice_c method for RefTaxon
choicemult
Generic method for multiple choice (using the gwidget...
choicemult-PasDeTemps-method
Graphical interface for multiple choice method for PasdeTemps...
choicemult-RefDC-method
choicemult, selection method for refDC allowing to select...
choicemult-RefStades-method
Multiple Choice method for RefStades referential objects
choicemult-RefTaxon-method
Multiple Choice method for Reftaxon referential objects, the...
choice-PasDeTemps-method
Method to select timesteps from the graphical interface
choice-RefAnnee-method
choice method for RefAnnee referential
choice-RefCheckBox-method
Choice method for ReCheckBox referential objects
choice-RefChoix-method
Choice method for Rechoice referential objects
choice-RefDC-method
Graphical method to choose a fishway through the interface
choice-RefDF-method
Graphical method to choose a fishway through the interface
choice-RefHorodate-method
Graphical interface
choice-RefListe-method
Choice method for RefListe referential objects
choice-Refpar-method
Choice method for Refpar referential objects
choice-Refparqual-method
Choice method for Refparqual referential objects, internal...
choice-RefStades-method
Choice method for RefStades referential objects
choice-RefStationMesure-method
Choice method for RefStationMesure referential object
choice-RefTaxon-method
Choice method for Reftaxon referential objects with only one...
choice-RefTextBox-method
Choice method for ReTextBox referential objects
coef_Durif
Silvering index coefficients from Caroline Durif (2009) to...
connect-BilanAnnuels-method
connect method for BilanAnnuels class this method performs...
connect-BilanArgentee-method
connect method for BilanArgentee
connect-Bilan_carlot-method
connect method for Bilan_carlot
connect-BilanConditionEnv-method
connect method for BilanConditionEnv class
connect-BilanEspeces-method
connect method for BilanEspeces
connect-BilanFonctionnementDC-method
connect method for BilanFonctionnementDC
connect-BilanFonctionnementDF-method
connect method for BilanFonctionnementDF
connect-BilanMigrationInterAnnuelle-method
connect method for BilanMigrationInterannuelle class
connect-BilanMigration-method
connect method for BilanMigration
connect-BilanMigrationMult-method
connect method for BilanMigrationMult
connect-BilanOperation-method
connect method for BilanOperation
connect-Bilan_poids_moyen-method
connect method for Bilan_Poids_moyen
connect-Bilan_stades_pigm-method
connect method for Bilan_stades_pigm
connect-Bilan_taille-method
connect method for class Bilan_taille
createmessage
Generic method to create messages
createmessage-RefMsg-method
createmessage method for RefMsg referential objects
currentDateDebut
Generic method for getting the beginning date for current...
currentDateDebut-PasDeTemps-method
Gets the starting date of a time step for an object of class...
currentDateFin
Generic method for getting the ending date for current time...
currentDateFin-PasDeTemps-method
Gets the ending date of a time step for an object of class...
DateFin
Generic method for getting the final date
DateFin-PasDeTemps-method
Gets the final horodate for an object of class...
envir_stacomi
Environment where most objects from the package are stored...
fn_EcritBilanJournalier
fn_EcritBilanJournier writes the daily migration in the...
fn_EcritBilanMensuel
This writes monthly data in t_bilanmensuel_mens table
fnstade
function drawing polygon from gamma law describing...
fn_table_per_dis
functions called in DF and DC
fntablestade
function calculating a table with pigment stages VB to VIA3...
f_stade_Durif
Function to calculate the stages from Durif
fun50
used by 'fundist' function, returns the value of obj where...
funbarchart1DC
Handler for barchart for BilanFonctionnementDF class from the...
funbarchart1DF
Handler for barchart for BilanFonctionnementDF class from the...
funbarchartDC
Function to create a barchart (lattice) corresponding to the...
funbarchartDF
Handler for barchart for BilanFonctionnementDF class from the...
fun_bilanMigrationMult
Calculate daily migration by simple repartition
fun_bilanMigrationMult_Overlaps
Function to calculate daily migration using overlaps...
funboxDC
function used for some lattice graph
funboxDF
Internal use, rectangles to describe the DF work for...
funboxplotBilanArgentee
Boxplots for ggplot2
funboxplotBilan_carlot
Boxplots for ggplot2
funcalcbilan_stades_pigm
main launching function for class Bilan_stades_pigm
fun_char_spe
function used to remove special non utf8 character which...
funchartDC
Handler fonction to plot calendar like graph, internal use
funchartDF
Handler fonction to plot calendar like graph, internal use
fundat
statistics per time period
fundensityBilanArgentee
fundensityBilanArgentee uses ggplot2 to draw density plots
fundensityBilan_carlot
fundensityBilan_carlot uses ggplot2 to draw density plots
fundist
fundist =function to calculate the median of the distribution...
fungraph
Function for BilanMigration graphes including numbers DF DC...
fungraphBilan_poids_moyen
fungraphBilan_poids_moyen
fungraph_civelle
Graph function for glass eel migration. Differs from fungraph...
fungraph_env
Function for class BilanMigrationEnv drawing both the...
fungraphgg
gglot function to draw graps of pigment stages
fungraphInteract_tail
fungraphInteract_tail uses the ggplot2usr interface to build...
fungraphstades
Main function for class Bilan_stades_pigm allowing to...
funout
this function uses gfile, edits a text with info and changing...
funphi
Function to calculate pigmentation times.
funpointBilanArgentee
Point graph from ggplot
funpointBilan_carlot
Point graph from ggplot
funSousListeBilanMigrationPar
funSousListeBilanMigrationPar
funstat
Function to calculate statistics per month
funstatJournalier
function to create daily statistics
funtable
function to print and save statistics in .csv and .html...
funtableBilanArgentee
table function
funtableBilan_carlot
table function
funtableBilan_tail
function used to display a table of the data
funtableDC
FuntableDC create a table output for BilanFonctionnementDC...
funtableDF
Table output for BilanFonctionnementDF class
funtitle_bilan_stades_pigm
Handler function which retrun the graphics titles date
funtraitementdate
This function extracts temporal characteristics from a...
funtraitement_poids
returns a table where weights and number are calculated from...
fun_weight_conversion
returns a table where weights and number are calculated from...
getAnnees
Generic method to get the years
getAnnees-PasDeTemps-method
Gets the year or a vector of years corresponding to the...
getdateDebut
Generic method the get starting date
getdateDebut-PasDeTemps-method
Returns the starting date as character
getLibellesPas
Generic method to get the string value of time step
getLibellesPas-PasDeTemps-method
Gets the string value of time step
getnoPasCourant
Generic method to get current time step
getnoPasCourant-PasDeTemps-method
Gets the current time step of an object of class...
getvalue
Generic method getvalue
getvalue-Refperiode-method
Returns the POSIXt value of a given name
graphdate
function used for some lattice graphes with dates
graphe-methods
Methods for Function graphe
hbarplotBilanAnnuels
Barplot handler
hbilA
handler function used by the main interface
hBilan_carlot
handler function used by the main interface
hBilanConditionEnv
handler function used by the main interface
hbilanConditionEnvgraph
hbilanConditionEnvgraph function called by handler which...
hBilanEspeces
handler function used by the main interface
hBilanEspecescalc
handler du calcul du BilanEspeces realise le calcul du bilan...
hBilanMigration
handler function used by the main interface
hbilanMigrationcalc
handler for calculations BilanMigration
hBilanMigrationConditionEnv
handler function used by the main interface
hbilanMigrationConditionEnvcalc
handler du graphique BilanMigrationConditionEnv realise le...
hbilanMigrationConditionEnvgraph
plot combining one ore several qualitative parameters with...
hbilanMigrationgraph
handler for hBilanMigrationgraph
hbilanMigrationgraph2
handler for hBilanMigrationgraph2
hBilanMigrationInterAnnuelle
handler function used by the main interface
hBilanMigrationMult
handler function used by the main interface
hbilanMigrationMultcalc
handler for calculations
hbilanMigrationMult_graph
handler for graphe method in BilanMigrationMult class
hbilanMigrationMultgraph2
handler du calcul hBilanMigrationgraph2
hbilanMigrationMultgraph3
hanler
hBilanMigrationPar
handler function used by the main interface
hbilanMigrationParcalc
handler for bilanmigrationpar
hbilanMigrationPargraph
le handler appelle la methode generique graphe sur l'object...
hbilanMigrationPargraph2
le handler appelle la methode generique graphe sur l'object...
hbilanMigrationParstat
This handler calls the generic method graphe on object...
hbilanMigrationwrite
handler hBilanMigrationwrite Allows the saving of daily and...
hCamembert
handler for pie chart draws a pie chart of species or a pie...
hDC
handler function used by the main interface
hDF
handler function used by the main interface
hDFDC
handler function used by the main interface#'
hfungraphstades
handler function for fungraphstades
hgraphBilanMigrationInterAnnuelle
Plot of all interannual from top to bottom
hgraphBilanMigrationInterAnnuelle2
Plot of daily migrations
hgraphBilanMigrationInterAnnuelle3
Step plot with different years displayed on the same graph....
hgraphBilanMigrationInterAnnuelle4
Plot comparing the migration to the migration computed for...
hgraphBilanMigrationInterAnnuelle5
Function displaying comparaison similar to...
hgraphBilanMigrationInterAnnuelle7
This function creates a cumulated area plot to highlight...
hOPE
handler function used by the main interface
houtBilanMigration
handler to print the command line
houtBilanMigrationMult
handler to print the command line
houtDC
handler to print the command line
houtDF
handler to print the command line
hpds
handler function used by the main interface
hplotBilanAnnuels
plot handler
hsilver
handler function used by the main interface
hSt
handler function used by the main interface
hsummaryBilanMigrationInterannuelle
Summary handler internal method
hTableBilanEspeces
handler du calcul BilanEspeces : traitements appelle les...
hTableBilanMigration
handler for summary function, internal use calls functions...
hTableBilanMigrationMult
handler function
hTail
handler function used by the main interface
htodo
handler function used by the main interface
husr
Internal function, tests the connection and if it works loads...
hxtableBilanAnnuels
xtable handler
interface_BilanAnnuels
interface for BilanAnnuels class
interface_BilanArgentee
An interface that calls the object to build the user...
interface_Bilan_carlot
An interface that calls the object to build the user...
interface_BilanEspeces
Interface for BilanEspece class
interface_BilanFonctionnementDC
interface for BilanFonctionnementDC class
interface_BilanFonctionnementDF
interface for BilanFonctionnementDF class
interface_BilanMigration
Interface for BilanMigration class, internal use, this...
interface_BilanMigrationConditionEnv
interface for BilanMigrationConditionEnv class
interface_BilanMigrationInterAnnuelle
interface for BilanMigrationInterannuelle class
interface_BilanMigrationMult
graphical interface for BilanMigrationMult class
interface_BilanMigrationPar
interface for BilanMigrationPar class
interface_BilanPoidsMoyen
interface for Bilan_poids_moyen class
interface_Bilan_stades_pigm
An interface that calls the object to build the user...
interface_chooselang
An interface that calls the object to build the user...
interface_ConditionEnv
Interface for class conditionEnv
interface_graphique
Program launch, this function launches the GwidgetRgtk...
messages
Function used at the beginning of the program to display the...
msg
Messages
mygtkProgressBar
Progress bar using a gtkdialog, the progress bar is assigned...
out
Generic method getvalue
PasDeTempsChar-class
Class "PasDeTempsChar"
PasDeTemps-class
Class "PasDeTemps"
PasDeTempsJournalier-class
Class "PasDeTempsJournalier"
plot
Generic method for plot
plot-BilanAnnuels-missing-method
Plot method for BilanAnnuels
plot-BilanArgentee-missing-method
Plots of various type for BilanArgentee
plot-Bilan_carlot-missing-method
Plots of various type for BilanMigration, and performs...
plot-BilanFonctionnementDC-ANY-method
Different plots for BilanFonctionnementDC
plot-BilanFonctionnementDF-ANY-method
Different plots for BilanFonctionnementDF
plot-BilanMigration-ANY-method
Plots of various type for BilanMigration.
plot-BilanMigrationInterAnnuelle-missing-method
Plot method for BilanMigrationInterannuelle
plot-BilanMigrationMult-ANY-method
Plots of various type for BilanMigrationMult
plot-BilanMigrationPar-ANY-method
plot method for BilanMigrationPar
print-BilanArgentee-method
Method to print the command line of the object
print-Bilan_carlot-method
Method to print the command line of the object
print-BilanFonctionnementDC-method
Method to print the command line of the object
print-BilanFonctionnementDF-method
Method to print the command line of the object
print-BilanMigration-method
Method to print the command line of the object
print-BilanMigrationMult-method
Method to print the command line of the object
quitte
function used to clean the objects whithin the group and the...
RefAnnee-class
Year reference class
RefCheckBox-class
RefCheckBox referencial class
RefChoix-class
Class "RefChoix"
RefCoe-class
Class "RefCoe"
RefDC-class
Class "RefDC"
RefDF-class
Class "RefDF"
RefHorodate-class
Class RefHorodate
RefListe-class
Class "RefListe"
RefMsg-class
RefMsg referential class to load message according to the...
Refpar-class
Class "Refpar"
Refparqual-class
Class "Refparqual"
Refparquan-class
Class "Refparquan"
Refperiode-class
Class "Refperiode" referential class
RefStades-class
Class "RefStades"
RefStationMesure-class
Class "RefStationMesure"
RefTaxon-class
Class "RefTaxon"
RefTextBox-class
RefTextBox referencial class
setdateDebut
Generic method to set the starting date
setdateDebut-PasDeTemps-method
Sets starting date from a character
setRefHorodate-RefHorodate-method
Method to set the Horodate
split_per_day
Create a dataframe suitable for charts per 24h and day
stacomi
Function that loads the loginwindow, tests connection, and...
stacomiR-package
package Fish Migration Monitoring (stacomiR)- Stations de...
suivant
Generic method next
suivant-PasDeTemps-method
Gets the next time step
summary-BilanArgentee-method
summary for BilanArgentee
summary-Bilan_carlot-method
summary for Bilan_carlot
summary-BilanFonctionnementDC-method
summary for BilanFonctionnementDC, write csv and html output,...
summary-BilanFonctionnementDF-method
summary for BilanFonctionnementDF, write csv and html output,...
summary-BilanMigrationInterAnnuelle-method
summary for BilanMigrationInterAnnuelle provides summary...
summary-BilanMigration-method
summary for bilanMigration calls functions funstat and...
summary-BilanMigrationMult-method
summary for BilanMigrationMult calls functions funstat and...
supprime
Generic method to delete entires from the database
supprime-BilanMigrationInterAnnuelle-method
supprime method for BilanMigrationInterannuelle class
surface
plots polygons
validite_Annee
Validity check for RefAnnee
validite_RefHorodate
Validity check for RefHorodate
vector_to_listsql
Transforms a vector into a string called within an sql...
write_database
Generic method getvalue
xtable-BilanAnnuels-method
xtable funciton for BilanAnnuels-class create an xtable objet...

Files in this package

stacomiR/.Rinstignore
stacomiR/DESCRIPTION
stacomiR/NAMESPACE
stacomiR/R
stacomiR/R/BilanAnnuels.r
stacomiR/R/BilanArgentee.r
stacomiR/R/BilanConditionEnv.r
stacomiR/R/BilanEspeces.r
stacomiR/R/BilanFonctionnementDC.r
stacomiR/R/BilanFonctionnementDF.r
stacomiR/R/BilanMigration.r
stacomiR/R/BilanMigrationConditionEnv.r
stacomiR/R/BilanMigrationInterAnnuelle.r
stacomiR/R/BilanMigrationMult.r
stacomiR/R/BilanMigrationPar.r
stacomiR/R/BilanOperation.r
stacomiR/R/Bilan_carlot.r
stacomiR/R/Bilan_poids_moyen.r
stacomiR/R/Bilan_stades_pigm.r
stacomiR/R/Bilan_taille.r
stacomiR/R/PasDeTempsJournalier.r
stacomiR/R/PasdeTemps.r
stacomiR/R/RefAnnee.r
stacomiR/R/RefCheckBox.r
stacomiR/R/RefChoix.r
stacomiR/R/RefCoe.r
stacomiR/R/RefDC.r
stacomiR/R/RefDF.r
stacomiR/R/RefHorodate.r
stacomiR/R/RefListe.r
stacomiR/R/RefMsg.r
stacomiR/R/RefStades.r
stacomiR/R/RefStationMesure.r
stacomiR/R/RefTaxon.r
stacomiR/R/Refpar.r
stacomiR/R/Refparqual.r
stacomiR/R/Refparquan.r
stacomiR/R/Refperiode.r
stacomiR/R/ReftextBox.r
stacomiR/R/create_generic.r
stacomiR/R/data.r
stacomiR/R/fn_EcritBilanJournalier.r
stacomiR/R/fn_EcritBilanMensuel.r
stacomiR/R/fn_table_per_dis.r
stacomiR/R/funSousListeBilanMigrationPar.r
stacomiR/R/fungraph.r
stacomiR/R/fungraph_civelle.r
stacomiR/R/fungraph_env.r
stacomiR/R/funstat.r
stacomiR/R/funstatJournalier.r
stacomiR/R/funtable.r
stacomiR/R/funtraitement_poids.r
stacomiR/R/interface_BilanAnnuels.r
stacomiR/R/interface_BilanArgentee.r
stacomiR/R/interface_BilanConditionEnv.r
stacomiR/R/interface_BilanFonctionnementDC.r
stacomiR/R/interface_BilanFonctionnementDF.r
stacomiR/R/interface_BilanMigration.r
stacomiR/R/interface_BilanMigrationConditionEnv.r
stacomiR/R/interface_BilanMigrationInterannuelle.r
stacomiR/R/interface_BilanMigrationMult.r
stacomiR/R/interface_BilanMigrationPar.r
stacomiR/R/interface_Bilan_carlot.r
stacomiR/R/interface_Bilan_taille.r
stacomiR/R/interface_bilan_poids_moyen.r
stacomiR/R/interface_chooselang.r
stacomiR/R/messages.r
stacomiR/R/setAs.r
stacomiR/R/stacomi.r
stacomiR/R/utilitaires.r
stacomiR/data
stacomiR/data/bMM_Arzal.rda
stacomiR/data/bM_Arzal.rda
stacomiR/data/b_carlot.rda
stacomiR/data/bfDC.rda
stacomiR/data/bfDF.rda
stacomiR/data/bilA.rda
stacomiR/data/bilAM.rda
stacomiR/data/bilanArg.rda
stacomiR/data/bilanFonctionnementDC.rda
stacomiR/data/bilanFonctionnementDC_bM.rda
stacomiR/data/bilanFonctionnementDF.rda
stacomiR/data/bilanFonctionnementDF_bM.rda
stacomiR/data/bilanOperation.rda
stacomiR/data/bilanOperation_bM.rda
stacomiR/data/bmi.rda
stacomiR/data/calcmig.csv.gz
stacomiR/data/coef_Durif.rda
stacomiR/data/msg.rda
stacomiR/inst
stacomiR/inst/config
stacomiR/inst/config/generate_Roxygen2.R
stacomiR/inst/config/generate_data.R
stacomiR/inst/config/libraries.r
stacomiR/inst/config/stacomi_manual_launch.r
stacomiR/inst/config/test_vignette.R
stacomiR/inst/config/testthat.R
stacomiR/inst/examples
stacomiR/inst/examples/bilanAnnuels_example.R
stacomiR/inst/examples/bilanArgentee_example.R
stacomiR/inst/examples/bilanFonctionnementDC_example.R
stacomiR/inst/examples/bilanFonctionnementDF_example.R
stacomiR/inst/examples/bilanMigrationInterannuelle_example.R
stacomiR/inst/examples/bilanMigrationMult_Arzal.R
stacomiR/inst/examples/bilanMigration_Arzal.R
stacomiR/inst/examples/bilancarlot_example.R
stacomiR/inst/tests
stacomiR/inst/tests/testthat
stacomiR/inst/tests/testthat/test-00stacomir.R
stacomiR/inst/tests/testthat/test-00zRefclasses.R
stacomiR/inst/tests/testthat/test-01BilanMigrationMult.R
stacomiR/inst/tests/testthat/test-02BilanMigration.R
stacomiR/inst/tests/testthat/test-03BilanFonctionnementDF.R
stacomiR/inst/tests/testthat/test-04BilanFonctionnementDC.R
stacomiR/inst/tests/testthat/test-05Bilan_carlot.R
stacomiR/inst/tests/testthat/test-06Bilan_MigrationInterAnnuelle.R
stacomiR/man
stacomiR/man/BilanAnnuels-class.Rd
stacomiR/man/BilanArgentee-class.Rd
stacomiR/man/BilanConditionEnv-class.Rd
stacomiR/man/BilanEspeces-class.Rd
stacomiR/man/BilanFonctionnementDC-class.Rd
stacomiR/man/BilanFonctionnementDF-class.Rd
stacomiR/man/BilanMigration-class.Rd
stacomiR/man/BilanMigrationConditionEnv-class.Rd
stacomiR/man/BilanMigrationInterAnnuelle-class.Rd
stacomiR/man/BilanMigrationMult-class.Rd
stacomiR/man/BilanMigrationPar-class.Rd
stacomiR/man/BilanOperation-class.Rd
stacomiR/man/Bilan_carlot-class.Rd
stacomiR/man/Bilan_poids_moyen-class.Rd
stacomiR/man/Bilan_stades_pigm-class.Rd
stacomiR/man/Bilan_taille-class.Rd
stacomiR/man/DateFin-PasDeTemps-method.Rd
stacomiR/man/DateFin.Rd
stacomiR/man/PasDeTemps-class.Rd
stacomiR/man/PasDeTempsChar-class.Rd
stacomiR/man/PasDeTempsJournalier-class.Rd
stacomiR/man/RefAnnee-class.Rd
stacomiR/man/RefCheckBox-class.Rd
stacomiR/man/RefChoix-class.Rd
stacomiR/man/RefCoe-class.Rd
stacomiR/man/RefDC-class.Rd
stacomiR/man/RefDF-class.Rd
stacomiR/man/RefHorodate-class.Rd
stacomiR/man/RefListe-class.Rd
stacomiR/man/RefMsg-class.Rd
stacomiR/man/RefStades-class.Rd
stacomiR/man/RefStationMesure-class.Rd
stacomiR/man/RefTaxon-class.Rd
stacomiR/man/RefTextBox-class.Rd
stacomiR/man/Refpar-class.Rd
stacomiR/man/Refparqual-class.Rd
stacomiR/man/Refparquan-class.Rd
stacomiR/man/Refperiode-class.Rd
stacomiR/man/bMM_Arzal.Rd
stacomiR/man/bM_Arzal.Rd
stacomiR/man/b_carlot.Rd
stacomiR/man/barplot-BilanAnnuels-method.Rd
stacomiR/man/bfDC.Rd
stacomiR/man/bfDF.Rd
stacomiR/man/bilA.Rd
stacomiR/man/bilAM.Rd
stacomiR/man/bilanArg.Rd
stacomiR/man/bilanFonctionnementDC.Rd
stacomiR/man/bilanFonctionnementDC_bM.Rd
stacomiR/man/bilanFonctionnementDF.Rd
stacomiR/man/bilanFonctionnementDF_bM.Rd
stacomiR/man/bilanOperation.Rd
stacomiR/man/bilanOperation_bM.Rd
stacomiR/man/bmi.Rd
stacomiR/man/calcmig.Rd
stacomiR/man/calcule-BilanArgentee-method.Rd
stacomiR/man/calcule-BilanMigration-method.Rd
stacomiR/man/calcule-BilanMigrationConditionEnv-method.Rd
stacomiR/man/calcule-BilanMigrationMult-method.Rd
stacomiR/man/calcule-BilanMigrationPar-method.Rd
stacomiR/man/calcule-Bilan_carlot-method.Rd
stacomiR/man/calcule-Bilan_taille-method.Rd
stacomiR/man/calcule.Rd
stacomiR/man/charge-BilanAnnuels-method.Rd
stacomiR/man/charge-BilanArgentee-method.Rd
stacomiR/man/charge-BilanConditionEnv-method.Rd
stacomiR/man/charge-BilanEspeces-method.Rd
stacomiR/man/charge-BilanFonctionnementDC-method.Rd
stacomiR/man/charge-BilanFonctionnementDF-method.Rd
stacomiR/man/charge-BilanMigration-method.Rd
stacomiR/man/charge-BilanMigrationInterAnnuelle-method.Rd
stacomiR/man/charge-BilanMigrationMult-method.Rd
stacomiR/man/charge-BilanOperation-method.Rd
stacomiR/man/charge-Bilan_carlot-method.Rd
stacomiR/man/charge-Bilan_poids_moyen-method.Rd
stacomiR/man/charge-Bilan_stades_pigm-method.Rd
stacomiR/man/charge-Bilan_taille-method.Rd
stacomiR/man/charge-RefAnnee-method.Rd
stacomiR/man/charge-RefCheckBox-method.Rd
stacomiR/man/charge-RefChoix-method.Rd
stacomiR/man/charge-RefCoe-method.Rd
stacomiR/man/charge-RefDC-method.Rd
stacomiR/man/charge-RefDF-method.Rd
stacomiR/man/charge-RefListe-method.Rd
stacomiR/man/charge-RefMsg-method.Rd
stacomiR/man/charge-RefStades-method.Rd
stacomiR/man/charge-RefStationMesure-method.Rd
stacomiR/man/charge-RefTaxon-method.Rd
stacomiR/man/charge-RefTextBox-method.Rd
stacomiR/man/charge-Refpar-method.Rd
stacomiR/man/charge-Refparqual-method.Rd
stacomiR/man/charge-Refparquan-method.Rd
stacomiR/man/charge.Rd
stacomiR/man/charge_avec_filtre-RefMsg-method.Rd
stacomiR/man/charge_avec_filtre-RefStades-method.Rd
stacomiR/man/charge_avec_filtre-RefTaxon-method.Rd
stacomiR/man/charge_avec_filtre-Refpar-method.Rd
stacomiR/man/charge_avec_filtre-Refparqual-method.Rd
stacomiR/man/charge_avec_filtre-Refparquan-method.Rd
stacomiR/man/charge_avec_filtre.Rd
stacomiR/man/charge_complement-Refparqual-method.Rd
stacomiR/man/charge_complement.Rd
stacomiR/man/chargecomplement-methods.Rd
stacomiR/man/chargecsv.Rd
stacomiR/man/choice-PasDeTemps-method.Rd
stacomiR/man/choice-RefAnnee-method.Rd
stacomiR/man/choice-RefCheckBox-method.Rd
stacomiR/man/choice-RefChoix-method.Rd
stacomiR/man/choice-RefDC-method.Rd
stacomiR/man/choice-RefDF-method.Rd
stacomiR/man/choice-RefHorodate-method.Rd
stacomiR/man/choice-RefListe-method.Rd
stacomiR/man/choice-RefStades-method.Rd
stacomiR/man/choice-RefStationMesure-method.Rd
stacomiR/man/choice-RefTaxon-method.Rd
stacomiR/man/choice-RefTextBox-method.Rd
stacomiR/man/choice-Refpar-method.Rd
stacomiR/man/choice-Refparqual-method.Rd
stacomiR/man/choice.Rd
stacomiR/man/choice_c-BilanAnnuels-method.Rd
stacomiR/man/choice_c-BilanArgentee-method.Rd
stacomiR/man/choice_c-BilanFonctionnementDC-method.Rd
stacomiR/man/choice_c-BilanFonctionnementDF-method.Rd
stacomiR/man/choice_c-BilanMigration-method.Rd
stacomiR/man/choice_c-BilanMigrationInterAnnuelle-method.Rd
stacomiR/man/choice_c-BilanMigrationMult-method.Rd
stacomiR/man/choice_c-Bilan_carlot-method.Rd
stacomiR/man/choice_c-PasDeTempsJournalier-method.Rd
stacomiR/man/choice_c-RefAnnee-method.Rd
stacomiR/man/choice_c-RefDC-method.Rd
stacomiR/man/choice_c-RefDF-method.Rd
stacomiR/man/choice_c-RefHorodate-method.Rd
stacomiR/man/choice_c-RefStades-method.Rd
stacomiR/man/choice_c-RefTaxon-method.Rd
stacomiR/man/choice_c-Refpar-method.Rd
stacomiR/man/choice_c.Rd
stacomiR/man/choicemult-PasDeTemps-method.Rd
stacomiR/man/choicemult-RefDC-method.Rd
stacomiR/man/choicemult-RefStades-method.Rd
stacomiR/man/choicemult-RefTaxon-method.Rd
stacomiR/man/choicemult.Rd
stacomiR/man/coef_Durif.Rd
stacomiR/man/connect-BilanAnnuels-method.Rd
stacomiR/man/connect-BilanArgentee-method.Rd
stacomiR/man/connect-BilanConditionEnv-method.Rd
stacomiR/man/connect-BilanEspeces-method.Rd
stacomiR/man/connect-BilanFonctionnementDC-method.Rd
stacomiR/man/connect-BilanFonctionnementDF-method.Rd
stacomiR/man/connect-BilanMigration-method.Rd
stacomiR/man/connect-BilanMigrationInterAnnuelle-method.Rd
stacomiR/man/connect-BilanMigrationMult-method.Rd
stacomiR/man/connect-BilanOperation-method.Rd
stacomiR/man/connect-Bilan_carlot-method.Rd
stacomiR/man/connect-Bilan_poids_moyen-method.Rd
stacomiR/man/connect-Bilan_stades_pigm-method.Rd
stacomiR/man/connect-Bilan_taille-method.Rd
stacomiR/man/createmessage-RefMsg-method.Rd
stacomiR/man/createmessage.Rd
stacomiR/man/currentDateDebut-PasDeTemps-method.Rd
stacomiR/man/currentDateDebut.Rd
stacomiR/man/currentDateFin-PasDeTemps-method.Rd
stacomiR/man/currentDateFin.Rd
stacomiR/man/envir_stacomi.Rd
stacomiR/man/f_stade_Durif.Rd
stacomiR/man/fn_EcritBilanJournalier.Rd
stacomiR/man/fn_EcritBilanMensuel.Rd
stacomiR/man/fn_table_per_dis.Rd
stacomiR/man/fnstade.Rd
stacomiR/man/fntablestade.Rd
stacomiR/man/fun50.Rd
stacomiR/man/funSousListeBilanMigrationPar.Rd
stacomiR/man/fun_bilanMigrationMult.Rd
stacomiR/man/fun_bilanMigrationMult_Overlaps.Rd
stacomiR/man/fun_char_spe.Rd
stacomiR/man/fun_weight_conversion.Rd
stacomiR/man/funbarchart1DC.Rd
stacomiR/man/funbarchart1DF.Rd
stacomiR/man/funbarchartDC.Rd
stacomiR/man/funbarchartDF.Rd
stacomiR/man/funboxDC.Rd
stacomiR/man/funboxDF.Rd
stacomiR/man/funboxplotBilanArgentee.Rd
stacomiR/man/funboxplotBilan_carlot.Rd
stacomiR/man/funcalcbilan_stades_pigm.Rd
stacomiR/man/funchartDC.Rd
stacomiR/man/funchartDF.Rd
stacomiR/man/fundat.Rd
stacomiR/man/fundensityBilanArgentee.Rd
stacomiR/man/fundensityBilan_carlot.Rd
stacomiR/man/fundist.Rd
stacomiR/man/fungraph.Rd
stacomiR/man/fungraphBilan_poids_moyen.Rd
stacomiR/man/fungraphInteract_tail.Rd
stacomiR/man/fungraph_civelle.Rd
stacomiR/man/fungraph_env.Rd
stacomiR/man/fungraphgg.Rd
stacomiR/man/fungraphstades.Rd
stacomiR/man/funout.Rd
stacomiR/man/funphi.Rd
stacomiR/man/funpointBilanArgentee.Rd
stacomiR/man/funpointBilan_carlot.Rd
stacomiR/man/funstat.Rd
stacomiR/man/funstatJournalier.Rd
stacomiR/man/funtable.Rd
stacomiR/man/funtableBilanArgentee.Rd
stacomiR/man/funtableBilan_carlot.Rd
stacomiR/man/funtableBilan_tail.Rd
stacomiR/man/funtableDC.Rd
stacomiR/man/funtableDF.Rd
stacomiR/man/funtitle_bilan_stades_pigm.Rd
stacomiR/man/funtraitement_poids.Rd
stacomiR/man/funtraitementdate.Rd
stacomiR/man/getAnnees-PasDeTemps-method.Rd
stacomiR/man/getAnnees.Rd
stacomiR/man/getLibellesPas-PasDeTemps-method.Rd
stacomiR/man/getLibellesPas.Rd
stacomiR/man/getdateDebut-PasDeTemps-method.Rd
stacomiR/man/getdateDebut.Rd
stacomiR/man/getnoPasCourant-PasDeTemps-method.Rd
stacomiR/man/getnoPasCourant.Rd
stacomiR/man/getvalue-Refperiode-method.Rd
stacomiR/man/getvalue.Rd
stacomiR/man/graphdate.Rd
stacomiR/man/graphe-methods.Rd
stacomiR/man/hBilanConditionEnv.Rd
stacomiR/man/hBilanEspeces.Rd
stacomiR/man/hBilanEspecescalc.Rd
stacomiR/man/hBilanMigration.Rd
stacomiR/man/hBilanMigrationConditionEnv.Rd
stacomiR/man/hBilanMigrationInterAnnuelle.Rd
stacomiR/man/hBilanMigrationMult.Rd
stacomiR/man/hBilanMigrationPar.Rd
stacomiR/man/hBilan_carlot.Rd
stacomiR/man/hCamembert.Rd
stacomiR/man/hDC.Rd
stacomiR/man/hDF.Rd
stacomiR/man/hDFDC.Rd
stacomiR/man/hOPE.Rd
stacomiR/man/hSt.Rd
stacomiR/man/hTableBilanEspeces.Rd
stacomiR/man/hTableBilanMigration.Rd
stacomiR/man/hTableBilanMigrationMult.Rd
stacomiR/man/hTail.Rd
stacomiR/man/hbarplotBilanAnnuels.Rd
stacomiR/man/hbilA.Rd
stacomiR/man/hbilanConditionEnvgraph.Rd
stacomiR/man/hbilanMigrationConditionEnvcalc.Rd
stacomiR/man/hbilanMigrationConditionEnvgraph.Rd
stacomiR/man/hbilanMigrationMult_graph.Rd
stacomiR/man/hbilanMigrationMultcalc.Rd
stacomiR/man/hbilanMigrationMultgraph2.Rd
stacomiR/man/hbilanMigrationMultgraph3.Rd
stacomiR/man/hbilanMigrationParcalc.Rd
stacomiR/man/hbilanMigrationPargraph.Rd
stacomiR/man/hbilanMigrationPargraph2.Rd
stacomiR/man/hbilanMigrationParstat.Rd
stacomiR/man/hbilanMigrationcalc.Rd
stacomiR/man/hbilanMigrationgraph.Rd
stacomiR/man/hbilanMigrationgraph2.Rd
stacomiR/man/hbilanMigrationwrite.Rd
stacomiR/man/hfungraphstades.Rd
stacomiR/man/hgraphBilanMigrationInterAnnuelle.Rd
stacomiR/man/hgraphBilanMigrationInterAnnuelle2.Rd
stacomiR/man/hgraphBilanMigrationInterAnnuelle3.Rd
stacomiR/man/hgraphBilanMigrationInterAnnuelle4.Rd
stacomiR/man/hgraphBilanMigrationInterAnnuelle5.Rd
stacomiR/man/hgraphBilanMigrationInterAnnuelle7.Rd
stacomiR/man/houtBilanMigration.Rd
stacomiR/man/houtBilanMigrationMult.Rd
stacomiR/man/houtDC.Rd
stacomiR/man/houtDF.Rd
stacomiR/man/hpds.Rd
stacomiR/man/hplotBilanAnnuels.Rd
stacomiR/man/hsilver.Rd
stacomiR/man/hsummaryBilanMigrationInterannuelle.Rd
stacomiR/man/htodo.Rd
stacomiR/man/husr.Rd
stacomiR/man/hxtableBilanAnnuels.Rd
stacomiR/man/interface_BilanAnnuels.Rd
stacomiR/man/interface_BilanArgentee.Rd
stacomiR/man/interface_BilanEspeces.Rd
stacomiR/man/interface_BilanFonctionnementDC.Rd
stacomiR/man/interface_BilanFonctionnementDF.Rd
stacomiR/man/interface_BilanMigration.Rd
stacomiR/man/interface_BilanMigrationConditionEnv.Rd
stacomiR/man/interface_BilanMigrationInterAnnuelle.Rd
stacomiR/man/interface_BilanMigrationMult.Rd
stacomiR/man/interface_BilanMigrationPar.Rd
stacomiR/man/interface_BilanPoidsMoyen.Rd
stacomiR/man/interface_Bilan_carlot.Rd
stacomiR/man/interface_Bilan_stades_pigm.Rd
stacomiR/man/interface_ConditionEnv.Rd
stacomiR/man/interface_chooselang.Rd
stacomiR/man/interface_graphique.Rd
stacomiR/man/messages.Rd
stacomiR/man/msg.Rd
stacomiR/man/mygtkProgressBar.Rd
stacomiR/man/out.Rd
stacomiR/man/plot-BilanAnnuels-missing-method.Rd
stacomiR/man/plot-BilanArgentee-missing-method.Rd
stacomiR/man/plot-BilanFonctionnementDC-ANY-method.Rd
stacomiR/man/plot-BilanFonctionnementDF-ANY-method.Rd
stacomiR/man/plot-BilanMigration-ANY-method.Rd
stacomiR/man/plot-BilanMigrationInterAnnuelle-missing-method.Rd
stacomiR/man/plot-BilanMigrationMult-ANY-method.Rd
stacomiR/man/plot-BilanMigrationPar-ANY-method.Rd
stacomiR/man/plot-Bilan_carlot-missing-method.Rd
stacomiR/man/plot.Rd
stacomiR/man/print-BilanArgentee-method.Rd
stacomiR/man/print-BilanFonctionnementDC-method.Rd
stacomiR/man/print-BilanFonctionnementDF-method.Rd
stacomiR/man/print-BilanMigration-method.Rd
stacomiR/man/print-BilanMigrationMult-method.Rd
stacomiR/man/print-Bilan_carlot-method.Rd
stacomiR/man/quitte.Rd
stacomiR/man/setRefHorodate-RefHorodate-method.Rd
stacomiR/man/setdateDebut-PasDeTemps-method.Rd
stacomiR/man/setdateDebut.Rd
stacomiR/man/split_per_day.Rd
stacomiR/man/stacomi.Rd
stacomiR/man/stacomiR-package.Rd
stacomiR/man/suivant-PasDeTemps-method.Rd
stacomiR/man/suivant.Rd
stacomiR/man/summary-BilanArgentee-method.Rd
stacomiR/man/summary-BilanFonctionnementDC-method.Rd
stacomiR/man/summary-BilanFonctionnementDF-method.Rd
stacomiR/man/summary-BilanMigration-method.Rd
stacomiR/man/summary-BilanMigrationInterAnnuelle-method.Rd
stacomiR/man/summary-BilanMigrationMult-method.Rd
stacomiR/man/summary-Bilan_carlot-method.Rd
stacomiR/man/supprime-BilanMigrationInterAnnuelle-method.Rd
stacomiR/man/supprime.Rd
stacomiR/man/surface.Rd
stacomiR/man/validite_Annee.Rd
stacomiR/man/validite_RefHorodate.Rd
stacomiR/man/vector_to_listsql.Rd
stacomiR/man/write_database.Rd
stacomiR/man/xtable-BilanAnnuels-method.Rd