stacomiR: Fish Migration Monitoring (stacomiR)

Graphical outputs and treatment for a database of fishway monitoring. It is a part of the STACOMI project developed in France by the ONEMA institute to centralize data obtained by fishway monitoring. Version 0.5.0 is available in French English and Spanish.

AuthorCedric Briand [aut, cre], Marion Legrand [aut]
Date of publication2016-12-21 21:47:25
MaintainerCedric Briand <cedric.briand00@gmail.com>
LicenseGPL (>= 2)
Version0.5.0

View on R-Forge

Man pages

barplot-BilanAnnuels-method: barplot method for object BilanAnnuels_class

b_carlot: An object of class Bilan_carlot-class with data loaded

bfDC: An object of class BilanFonctionnementDC-class with data...

bfDF: An object of class BilanFonctionnementDF-class with data...

bilA: An object of class BilanAnnuels-class with data loaded

bilAM: Annual migration of salmon by migradour

BilanAnnuels-class: Class "BilanAnnuels"

bilanArg: Silver eel migration in the Somme

BilanArgentee-class: Class "BilanArgentee"

Bilan_carlot-class: Class "Bilan_carlot"

BilanConditionEnv-class: class BilanConditionEnv simple output of one or several...

BilanEspeces-class: Class "BilanEspeces" Report of the species present at a...

bilanFonctionnementDC: An object of class BilanFonctionnementDC-class with data...

bilanFonctionnementDC_bM: An object of class BilanFonctionnementDC-class with data...

BilanFonctionnementDC-class: Class "BilanFonctionnementDC" Bilan du fonctionnement du...

bilanFonctionnementDF: An object of class BilanFonctionnementDF-class with data...

bilanFonctionnementDF_bM: An object of class BilanFonctionnementDF-class with data...

BilanFonctionnementDF-class: Class "BilanFonctionnementDF" Report fishway work

BilanMigration-class: Migration report for one DC, one species and one stage

BilanMigrationConditionEnv-class: Class "BilanMigrationConditionEnv"

BilanMigrationInterAnnuelle-class: Class "BilanMigrationInterAnnuelle"

BilanMigrationMult-class: Migration reports for multiple DC / species / stages

BilanMigrationPar-class: Migration report along with quantitative and qualitative...

bilanOperation: An object of class BilanOperation-class with data loaded

bilanOperation_bM: An object of class BilanOperation-class with data loaded

BilanOperation-class: Report on operations

Bilan_poids_moyen-class: Class "Bilan_poids_moyen"

Bilan_stades_pigm-class: Bilan class for pigment stage structure analysis (glass eel)

Bilan_taille-class: Class "Bilan_taille" Bilan class

bM_Arzal: An object of class bilanMigration with data loaded

bmi: An object of class BilanMigrationInterAnnuelle-class with...

bMM_Arzal: An object of class bilanMigrationMult with data loaded

calcmig: dataframe containing the default connection arguments the...

calcule: Generic method for calculations

calcule-BilanArgentee-method: Calcule method for BilanArgentee, this method will pass the...

calcule-Bilan_carlot-method: Calcule method for Bilan_carlot

calcule-BilanMigrationConditionEnv-method: Performs the calculations of environment conditions attached...

calcule-BilanMigration-method: calcule method for BilanMigration

calcule-BilanMigrationMult-method: calcule method for BilanMigrationMult

calcule-BilanMigrationPar-method: calcule methode

calcule-Bilan_taille-method: Calcule method for BilanTaille

charge: Generic method to load referentials

charge_avec_filtre: Generic method to load referentials, with filters from the...

charge_avec_filtre-RefMsg-method: Loading method for RefMsg referential objects

charge_avec_filtre-Refpar-method: Loading method for Repar referential objects searching only...

charge_avec_filtre-Refparqual-method: Loading method for Reparqual referential objects searching...

charge_avec_filtre-Refparquan-method: Loading method for Reparquan referential objects searching...

charge_avec_filtre-RefStades-method: Loading method for RefStades referential objects searching...

charge_avec_filtre-RefTaxon-method: Loading method for RefTaxon referential objects searching...

charge-BilanAnnuels-method: charge method for BilanAnnuels class

charge-BilanArgentee-method: charge method for BilanArgentee class

charge-Bilan_carlot-method: charge method for Bilan_carlot class

charge-BilanConditionEnv-method: charge method for BilanCondtionEnv class

charge-BilanEspeces-method: charge method for BilanEspeces verifies the content of...

charge-BilanFonctionnementDC-method: charge method for BilanFonctionnementDC

charge-BilanFonctionnementDF-method: charge method for BilanFonctionnementDF

charge-BilanMigrationInterAnnuelle-method: loading method for BilanMigrationInterannuelle class

charge-BilanMigration-method: charge method for BilanMigration

charge-BilanMigrationMult-method: charge method for BilanMigrationMult

charge-BilanOperation-method: charge method for BilanOperation

charge-Bilan_poids_moyen-method: charge method for Bilan_poids_moyen class

charge-Bilan_stades_pigm-method: Charge method for BilanStadePigm

charge-Bilan_taille-method: charge method for Bilan_taille

charge_complement: Generic method to load additional data

chargecomplement-methods: Methods for Function chargecomplement

charge_complement-Refparqual-method: Loads an additional dataset this method is loaded to obtain...

chargecsv: chargecsv loads the informations stored in c:/program...

charge-RefAnnee-method: Loading method for RefAnnee referential objects

charge-RefCheckBox-method: Loading method for ReCheckBox referential objects

charge-RefChoix-method: Loading method for Rechoice referential objects

charge-RefCoe-method: loads the coefficients for the period defined in class

charge-RefDC-method: Method to load the counting devices of the control station

charge-RefDF-method: Loading method for DF referential objects

charge-RefListe-method: Loading method for Refliste referential objects

charge-RefMsg-method: Loading method for RefMsg referential objects

charge-Refpar-method: Loading method for Repar referential objects

charge-Refparqual-method: Loading method for Reparqual referential objects

charge-Refparquan-method: Loading method for Reparquan referential objects

charge-RefStades-method: Loading method for RefStades referential objects

charge-RefStationMesure-method: Loading method for RefStationMesure referential object

charge-RefTaxon-method: Loading method for RefTaxon referential objects

charge-RefTextBox-method: Loading method for ReTextBox referential objects

choice: Generic method for choice (using the gwidget graphical...

choice_c: Generic method for manual choice

choice_c-BilanAnnuels-method: command line interface for BilanAnnuels-class

choice_c-BilanArgentee-method: command line interface for BilanArgentee class

choice_c-Bilan_carlot-method: command line interface for Bilan_carlot class

choice_c-BilanFonctionnementDC-method: command line interface for BilanFonctionnementDC class

choice_c-BilanFonctionnementDF-method: command line interface for BilanFonctionnementDF class

choice_c-BilanMigrationInterAnnuelle-method: command line interface for BilanMigrationInterAnnuelle class

choice_c-BilanMigration-method: command line interface for BilanMigration class

choice_c-BilanMigrationMult-method: command line interface for BilanMigrationMult class

choice_c-PasDeTempsJournalier-method: choice_c method for class PasDeTempsJournalier

choice_c-RefAnnee-method: choice method for RefAnnee referential from the command line

choice_c-RefDC-method: Command line interface to select a counting device

choice_c-RefDF-method: Command line interface to choose a fishway

choice_c-RefHorodate-method: Command line

choice_c-Refpar-method: Command line interface to select a parameter

choice_c-RefStades-method: choice_c method for RefStades

choice_c-RefTaxon-method: choice_c method for RefTaxon

choicemult: Generic method for multiple choice (using the gwidget...

choicemult-PasDeTemps-method: Graphical interface for multiple choice method for PasdeTemps...

choicemult-RefDC-method: choicemult, selection method for refDC allowing to select...

choicemult-RefStades-method: Multiple Choice method for RefStades referential objects

choicemult-RefTaxon-method: Multiple Choice method for Reftaxon referential objects, the...

choice-PasDeTemps-method: Method to select timesteps from the graphical interface

choice-RefAnnee-method: choice method for RefAnnee referential

choice-RefCheckBox-method: Choice method for ReCheckBox referential objects

choice-RefChoix-method: Choice method for Rechoice referential objects

choice-RefDC-method: Graphical method to choose a fishway through the interface

choice-RefDF-method: Graphical method to choose a fishway through the interface

choice-RefHorodate-method: Graphical interface

choice-RefListe-method: Choice method for RefListe referential objects

choice-Refpar-method: Choice method for Refpar referential objects

choice-Refparqual-method: Choice method for Refparqual referential objects, internal...

choice-RefStades-method: Choice method for RefStades referential objects

choice-RefStationMesure-method: Choice method for RefStationMesure referential object

choice-RefTaxon-method: Choice method for Reftaxon referential objects with only one...

choice-RefTextBox-method: Choice method for ReTextBox referential objects

coef_Durif: Silvering index coefficients from Caroline Durif (2009) to...

connect-BilanAnnuels-method: connect method for BilanAnnuels class this method performs...

connect-BilanArgentee-method: connect method for BilanArgentee

connect-Bilan_carlot-method: connect method for Bilan_carlot

connect-BilanConditionEnv-method: connect method for BilanConditionEnv class

connect-BilanEspeces-method: connect method for BilanEspeces

connect-BilanFonctionnementDC-method: connect method for BilanFonctionnementDC

connect-BilanFonctionnementDF-method: connect method for BilanFonctionnementDF

connect-BilanMigrationInterAnnuelle-method: connect method for BilanMigrationInterannuelle class

connect-BilanMigration-method: connect method for BilanMigration

connect-BilanMigrationMult-method: connect method for BilanMigrationMult

connect-BilanOperation-method: connect method for BilanOperation

connect-Bilan_poids_moyen-method: connect method for Bilan_Poids_moyen

connect-Bilan_stades_pigm-method: connect method for Bilan_stades_pigm

connect-Bilan_taille-method: connect method for class Bilan_taille

createmessage: Generic method to create messages

createmessage-RefMsg-method: createmessage method for RefMsg referential objects

currentDateDebut: Generic method for getting the beginning date for current...

currentDateDebut-PasDeTemps-method: Gets the starting date of a time step for an object of class...

currentDateFin: Generic method for getting the ending date for current time...

currentDateFin-PasDeTemps-method: Gets the ending date of a time step for an object of class...

DateFin: Generic method for getting the final date

DateFin-PasDeTemps-method: Gets the final horodate for an object of class...

envir_stacomi: Environment where most objects from the package are stored...

fn_EcritBilanJournalier: fn_EcritBilanJournier writes the daily migration in the...

fn_EcritBilanMensuel: This writes monthly data in t_bilanmensuel_mens table

fnstade: function drawing polygon from gamma law describing...

fn_table_per_dis: functions called in DF and DC

fntablestade: function calculating a table with pigment stages VB to VIA3...

f_stade_Durif: Function to calculate the stages from Durif

fun50: used by 'fundist' function, returns the value of obj where...

funbarchart1DC: Handler for barchart for BilanFonctionnementDF class from the...

funbarchart1DF: Handler for barchart for BilanFonctionnementDF class from the...

funbarchartDC: Function to create a barchart (lattice) corresponding to the...

funbarchartDF: Handler for barchart for BilanFonctionnementDF class from the...

fun_bilanMigrationMult: Calculate daily migration by simple repartition

fun_bilanMigrationMult_Overlaps: Function to calculate daily migration using overlaps...

funboxDC: function used for some lattice graph

funboxDF: Internal use, rectangles to describe the DF work for...

funboxplotBilan_carlot: Boxplots for ggplot2

funcalcbilan_stades_pigm: main launching function for class Bilan_stades_pigm

fun_char_spe: function used to remove special non utf8 character which...

funchartDC: Handler fonction to plot calendar like graph, internal use

funchartDF: Handler fonction to plot calendar like graph, internal use

fundat: statistics per time period

fundensityBilan_carlot: fundensityBilan_carlot uses ggplot2 to draw density plots

fundist: fundist =function to calculate the median of the distribution...

fungraph: Function for BilanMigration graphes including numbers DF DC...

fungraphBilan_poids_moyen: fungraphBilan_poids_moyen

fungraph_civelle: Graph function for glass eel migration. Differs from fungraph...

fungraph_env: Function for class BilanMigrationEnv drawing both the...

fungraphgg: gglot function to draw graps of pigment stages

fungraphInteract_tail: fungraphInteract_tail uses the ggplot2usr interface to build...

fungraphstades: Main function for class Bilan_stades_pigm allowing to...

funout: this function uses gfile, edits a text with info and changing...

funphi: Function to calculate pigmentation times.

funplotBilanArgentee: funplotBilanArgentee

funpointBilan_carlot: Point graph from ggplot

funSousListeBilanMigrationPar: funSousListeBilanMigrationPar

funstat: Function to calculate statistics per month

funstatJournalier: function to create daily statistics

funtable: function to print and save statistics in .csv and .html...

funtableBilanArgentee: table function

funtableBilan_carlot: table function

funtableBilan_tail: function used to display a table of the data

funtableDC: FuntableDC create a table output for BilanFonctionnementDC...

funtableDF: Table output for BilanFonctionnementDF class

funtitle_bilan_stades_pigm: Handler function which retrun the graphics titles date

funtraitementdate: This function extracts temporal characteristics from a...

funtraitement_poids: returns a table where weights and number are calculated from...

fun_weight_conversion: returns a table where weights and number are calculated from...

getAnnees: Generic method to get the years

getAnnees-PasDeTemps-method: Gets the year or a vector of years corresponding to the...

getdateDebut: Generic method the get starting date

getdateDebut-PasDeTemps-method: Returns the starting date as character

getLibellesPas: Generic method to get the string value of time step

getLibellesPas-PasDeTemps-method: Gets the string value of time step

getnoPasCourant: Generic method to get current time step

getnoPasCourant-PasDeTemps-method: Gets the current time step of an object of class...

getvalue: Generic method getvalue

getvalue-Refperiode-method: Returns the POSIXt value of a given name

graphdate: function used for some lattice graphes with dates

graphe-methods: Methods for Function graphe

hbarplotBilanAnnuels: Barplot handler

hbilA: handler function used by the main interface

hBilan_carlot: handler function used by the main interface

hBilanConditionEnv: handler function used by the main interface

hbilanConditionEnvgraph: hbilanConditionEnvgraph function called by handler which...

hBilanEspeces: handler function used by the main interface

hBilanEspecescalc: handler du calcul du BilanEspeces realise le calcul du bilan...

hBilanMigration: handler function used by the main interface

hbilanMigrationcalc: handler for calculations BilanMigration

hBilanMigrationConditionEnv: handler function used by the main interface

hbilanMigrationConditionEnvcalc: handler du graphique BilanMigrationConditionEnv realise le...

hbilanMigrationConditionEnvgraph: plot combining one ore several qualitative parameters with...

hbilanMigrationgraph: handler for hBilanMigrationgraph

hbilanMigrationgraph2: handler for hBilanMigrationgraph2

hBilanMigrationInterAnnuelle: handler function used by the main interface

hBilanMigrationMult: handler function used by the main interface

hbilanMigrationMultcalc: handler for calculations

hbilanMigrationMult_graph: handler for graphe method in BilanMigrationMult class

hbilanMigrationMultgraph2: handler du calcul hBilanMigrationgraph2

hbilanMigrationMultgraph3: hanler

hBilanMigrationPar: handler function used by the main interface

hbilanMigrationParcalc: handler for bilanmigrationpar

hbilanMigrationPargraph: le handler appelle la methode generique graphe sur l'object...

hbilanMigrationPargraph2: le handler appelle la methode generique graphe sur l'object...

hbilanMigrationParstat: This handler calls the generic method graphe on object...

hbilanMigrationwrite: handler hBilanMigrationwrite Allows the saving of daily and...

hCamembert: handler for pie chart draws a pie chart of species or a pie...

hDC: handler function used by the main interface

hDF: handler function used by the main interface

hDFDC: handler function used by the main interface#'

hfungraphstades: handler function for fungraphstades

hgraphBilanMigrationInterAnnuelle: Plot of all interannual from top to bottom

hgraphBilanMigrationInterAnnuelle2: Plot of daily migrations

hgraphBilanMigrationInterAnnuelle3: Step plot with different years displayed on the same graph....

hgraphBilanMigrationInterAnnuelle4: Plot comparing the migration to the migration computed for...

hgraphBilanMigrationInterAnnuelle5: Function displaying comparaison similar to...

hgraphBilanMigrationInterAnnuelle7: This function creates a cumulated area plot to highlight...

hOPE: handler function used by the main interface

houtBilanMigration: handler to print the command line

houtBilanMigrationMult: handler to print the command line

houtDC: handler to print the command line

houtDF: handler to print the command line

hpds: handler function used by the main interface

hplotBilanAnnuels: plot handler

hsilver: handler function used by the main interface

hSt: handler function used by the main interface

hsummaryBilanMigrationInterannuelle: Summary handler internal method

hTableBilanEspeces: handler du calcul BilanEspeces : traitements appelle les...

hTableBilanMigration: handler for summary function, internal use calls functions...

hTableBilanMigrationMult: handler function

hTail: handler function used by the main interface

htodo: handler function used by the main interface

husr: Internal function, tests the connection and if it works loads...

hxtableBilanAnnuels: xtable handler

interface_BilanAnnuels: interface for BilanAnnuels class

interface_BilanArgentee: An interface that calls the object to build the user...

interface_Bilan_carlot: An interface that calls the object to build the user...

interface_BilanEspeces: Interface for BilanEspece class

interface_BilanFonctionnementDC: interface for BilanFonctionnementDC class

interface_BilanFonctionnementDF: interface for BilanFonctionnementDF class

interface_BilanMigration: Interface for BilanMigration class, internal use, this...

interface_BilanMigrationConditionEnv: interface for BilanMigrationConditionEnv class

interface_BilanMigrationInterAnnuelle: interface for BilanMigrationInterannuelle class

interface_BilanMigrationMult: graphical interface for BilanMigrationMult class

interface_BilanMigrationPar: interface for BilanMigrationPar class

interface_BilanPoidsMoyen: interface for Bilan_poids_moyen class

interface_Bilan_stades_pigm: An interface that calls the object to build the user...

interface_chooselang: An interface that calls the object to build the user...

interface_ConditionEnv: Interface for class conditionEnv

interface_graphique: Program launch, this function launches the GwidgetRgtk...

messages: Function used at the beginning of the program to display the...

msg: Messages

mygtkProgressBar: Progress bar using a gtkdialog, the progress bar is assigned...

out: Generic method getvalue

PasDeTempsChar-class: Class "PasDeTempsChar"

PasDeTemps-class: Class "PasDeTemps"

PasDeTempsJournalier-class: Class "PasDeTempsJournalier"

plot: Generic method for plot

plot-BilanAnnuels-missing-method: Plot method for BilanAnnuels

plot-BilanArgentee-missing-method: Plots of various type for BilanArgentee

plot-Bilan_carlot-missing-method: Plots of various type for BilanMigration, and performs...

plot-BilanFonctionnementDC-ANY-method: Different plots for BilanFonctionnementDC

plot-BilanFonctionnementDF-ANY-method: Different plots for BilanFonctionnementDF

plot-BilanMigration-ANY-method: Plots of various type for BilanMigration.

plot-BilanMigrationInterAnnuelle-missing-method: Plot method for BilanMigrationInterannuelle

plot-BilanMigrationMult-ANY-method: Plots of various type for BilanMigrationMult

plot-BilanMigrationPar-ANY-method: plot method for BilanMigrationPar

print-BilanArgentee-method: Method to print the command line of the object

print-Bilan_carlot-method: Method to print the command line of the object

print-BilanFonctionnementDC-method: Method to print the command line of the object

print-BilanFonctionnementDF-method: Method to print the command line of the object

print-BilanMigration-method: Method to print the command line of the object

print-BilanMigrationMult-method: Method to print the command line of the object

quitte: function used to clean the objects whithin the group and the...

RefAnnee-class: Year reference class

RefCheckBox-class: RefCheckBox referencial class

RefChoix-class: Class "RefChoix"

RefCoe-class: Class "RefCoe"

RefDC-class: Class "RefDC"

RefDF-class: Class "RefDF"

RefHorodate-class: Class RefHorodate

RefListe-class: Class "RefListe"

RefMsg-class: RefMsg referential class to load message according to the...

Refpar-class: Class "Refpar"

Refparqual-class: Class "Refparqual"

Refparquan-class: Class "Refparquan"

Refperiode-class: Class "Refperiode" referential class

RefStades-class: Class "RefStades"

RefStationMesure-class: Class "RefStationMesure"

RefTaxon-class: Class "RefTaxon"

RefTextBox-class: RefTextBox referencial class

setdateDebut: Generic method to set the starting date

setdateDebut-PasDeTemps-method: Sets starting date from a character

setRefHorodate-RefHorodate-method: Method to set the Horodate

split_per_day: Create a dataframe suitable for charts per 24h and day

stacomi: Function that loads the loginwindow, tests connection, and...

stacomiR-package: package Fish Migration Monitoring (stacomiR)- Stations de...

suivant: Generic method next

suivant-PasDeTemps-method: Gets the next time step

summary-BilanArgentee-method: summary for BilanArgentee

summary-Bilan_carlot-method: summary for Bilan_carlot

summary-BilanFonctionnementDC-method: summary for BilanFonctionnementDC, write csv and html output,...

summary-BilanFonctionnementDF-method: summary for BilanFonctionnementDF, write csv and html output,...

summary-BilanMigrationInterAnnuelle-method: summary for BilanMigrationInterAnnuelle provides summary...

summary-BilanMigration-method: summary for bilanMigration calls functions funstat and...

summary-BilanMigrationMult-method: summary for BilanMigrationMult calls functions funstat and...

supprime: Generic method to delete entires from the database

supprime-BilanMigrationInterAnnuelle-method: supprime method for BilanMigrationInterannuelle class

surface: plots polygons

validite_Annee: Validity check for RefAnnee

validite_RefHorodate: Validity check for RefHorodate

vector_to_listsql: Transforms a vector into a string called within an sql...

write_database: Generic method getvalue

xtable-BilanAnnuels-method: xtable funciton for BilanAnnuels-class create an xtable objet...

Files in this package

stacomiR/.Rinstignore
stacomiR/DESCRIPTION
stacomiR/NAMESPACE
stacomiR/R
stacomiR/R/BilanAnnuels.r
stacomiR/R/BilanArgentee.r
stacomiR/R/BilanConditionEnv.r
stacomiR/R/BilanEspeces.r
stacomiR/R/BilanFonctionnementDC.r
stacomiR/R/BilanFonctionnementDF.r
stacomiR/R/BilanMigration.r
stacomiR/R/BilanMigrationConditionEnv.r
stacomiR/R/BilanMigrationInterAnnuelle.r
stacomiR/R/BilanMigrationMult.r
stacomiR/R/BilanMigrationPar.r
stacomiR/R/BilanOperation.r
stacomiR/R/Bilan_carlot.r
stacomiR/R/Bilan_poids_moyen.r
stacomiR/R/Bilan_stades_pigm.r
stacomiR/R/Bilan_taille.r
stacomiR/R/PasDeTempsJournalier.r
stacomiR/R/PasdeTemps.r
stacomiR/R/RefAnnee.r
stacomiR/R/RefCheckBox.r
stacomiR/R/RefChoix.r
stacomiR/R/RefCoe.r
stacomiR/R/RefDC.r
stacomiR/R/RefDF.r
stacomiR/R/RefHorodate.r
stacomiR/R/RefListe.r
stacomiR/R/RefMsg.r
stacomiR/R/RefStades.r
stacomiR/R/RefStationMesure.r
stacomiR/R/RefTaxon.r
stacomiR/R/Refpar.r
stacomiR/R/Refparqual.r
stacomiR/R/Refparquan.r
stacomiR/R/Refperiode.r
stacomiR/R/ReftextBox.r
stacomiR/R/create_generic.r
stacomiR/R/data.r
stacomiR/R/fn_EcritBilanJournalier.r
stacomiR/R/fn_EcritBilanMensuel.r
stacomiR/R/fn_table_per_dis.r
stacomiR/R/funSousListeBilanMigrationPar.r
stacomiR/R/fungraph.r
stacomiR/R/fungraph_civelle.r
stacomiR/R/fungraph_env.r
stacomiR/R/funstat.r
stacomiR/R/funstatJournalier.r
stacomiR/R/funtable.r
stacomiR/R/funtraitement_poids.r
stacomiR/R/interface_BilanAnnuels.r
stacomiR/R/interface_BilanArgentee.r
stacomiR/R/interface_BilanConditionEnv.r
stacomiR/R/interface_BilanFonctionnementDC.r
stacomiR/R/interface_BilanFonctionnementDF.r
stacomiR/R/interface_BilanMigration.r
stacomiR/R/interface_BilanMigrationConditionEnv.r
stacomiR/R/interface_BilanMigrationInterannuelle.r
stacomiR/R/interface_BilanMigrationMult.r
stacomiR/R/interface_BilanMigrationPar.r
stacomiR/R/interface_Bilan_carlot.r
stacomiR/R/interface_Bilan_taille.r
stacomiR/R/interface_bilan_poids_moyen.r
stacomiR/R/interface_chooselang.r
stacomiR/R/messages.r
stacomiR/R/setAs.r
stacomiR/R/stacomi.r
stacomiR/R/utilitaires.r
stacomiR/data
stacomiR/data/bMM_Arzal.rda
stacomiR/data/bM_Arzal.rda
stacomiR/data/b_carlot.rda
stacomiR/data/bfDC.rda
stacomiR/data/bfDF.rda
stacomiR/data/bilA.rda
stacomiR/data/bilAM.rda
stacomiR/data/bilanArg.rda
stacomiR/data/bilanFonctionnementDC.rda
stacomiR/data/bilanFonctionnementDC_bM.rda
stacomiR/data/bilanFonctionnementDF.rda
stacomiR/data/bilanFonctionnementDF_bM.rda
stacomiR/data/bilanOperation.rda
stacomiR/data/bilanOperation_bM.rda
stacomiR/data/bmi.rda
stacomiR/data/calcmig.csv.gz
stacomiR/data/coef_Durif.rda
stacomiR/data/msg.rda
stacomiR/inst
stacomiR/inst/config
stacomiR/inst/config/generate_Roxygen2.R
stacomiR/inst/config/generate_data.R
stacomiR/inst/config/libraries.r
stacomiR/inst/config/stacomi_manual_launch.r
stacomiR/inst/config/test_vignette.R
stacomiR/inst/config/testthat.R
stacomiR/inst/examples
stacomiR/inst/examples/bilanAnnuels_example.R
stacomiR/inst/examples/bilanArgentee_example.R
stacomiR/inst/examples/bilanFonctionnementDC_example.R
stacomiR/inst/examples/bilanFonctionnementDF_example.R
stacomiR/inst/examples/bilanMigrationInterannuelle_example.R
stacomiR/inst/examples/bilanMigrationMult_Arzal.R
stacomiR/inst/examples/bilanMigration_Arzal.R
stacomiR/inst/examples/bilancarlot_example.R
stacomiR/inst/tests
stacomiR/inst/tests/testthat
stacomiR/inst/tests/testthat/test-00stacomir.R
stacomiR/inst/tests/testthat/test-00zRefclasses.R
stacomiR/inst/tests/testthat/test-01BilanMigrationMult.R
stacomiR/inst/tests/testthat/test-02BilanMigration.R
stacomiR/inst/tests/testthat/test-03BilanFonctionnementDF.R
stacomiR/inst/tests/testthat/test-04BilanFonctionnementDC.R
stacomiR/inst/tests/testthat/test-05Bilan_carlot.R
stacomiR/inst/tests/testthat/test-06Bilan_MigrationInterAnnuelle.R
stacomiR/man
stacomiR/man/BilanAnnuels-class.Rd stacomiR/man/BilanArgentee-class.Rd stacomiR/man/BilanConditionEnv-class.Rd stacomiR/man/BilanEspeces-class.Rd stacomiR/man/BilanFonctionnementDC-class.Rd stacomiR/man/BilanFonctionnementDF-class.Rd stacomiR/man/BilanMigration-class.Rd stacomiR/man/BilanMigrationConditionEnv-class.Rd stacomiR/man/BilanMigrationInterAnnuelle-class.Rd stacomiR/man/BilanMigrationMult-class.Rd stacomiR/man/BilanMigrationPar-class.Rd stacomiR/man/BilanOperation-class.Rd stacomiR/man/Bilan_carlot-class.Rd stacomiR/man/Bilan_poids_moyen-class.Rd stacomiR/man/Bilan_stades_pigm-class.Rd stacomiR/man/Bilan_taille-class.Rd stacomiR/man/DateFin-PasDeTemps-method.Rd stacomiR/man/DateFin.Rd stacomiR/man/PasDeTemps-class.Rd stacomiR/man/PasDeTempsChar-class.Rd stacomiR/man/PasDeTempsJournalier-class.Rd stacomiR/man/RefAnnee-class.Rd stacomiR/man/RefCheckBox-class.Rd stacomiR/man/RefChoix-class.Rd stacomiR/man/RefCoe-class.Rd stacomiR/man/RefDC-class.Rd stacomiR/man/RefDF-class.Rd stacomiR/man/RefHorodate-class.Rd stacomiR/man/RefListe-class.Rd stacomiR/man/RefMsg-class.Rd stacomiR/man/RefStades-class.Rd stacomiR/man/RefStationMesure-class.Rd stacomiR/man/RefTaxon-class.Rd stacomiR/man/RefTextBox-class.Rd stacomiR/man/Refpar-class.Rd stacomiR/man/Refparqual-class.Rd stacomiR/man/Refparquan-class.Rd stacomiR/man/Refperiode-class.Rd stacomiR/man/bMM_Arzal.Rd stacomiR/man/bM_Arzal.Rd stacomiR/man/b_carlot.Rd stacomiR/man/barplot-BilanAnnuels-method.Rd stacomiR/man/bfDC.Rd stacomiR/man/bfDF.Rd stacomiR/man/bilA.Rd stacomiR/man/bilAM.Rd stacomiR/man/bilanArg.Rd stacomiR/man/bilanFonctionnementDC.Rd stacomiR/man/bilanFonctionnementDC_bM.Rd stacomiR/man/bilanFonctionnementDF.Rd stacomiR/man/bilanFonctionnementDF_bM.Rd stacomiR/man/bilanOperation.Rd stacomiR/man/bilanOperation_bM.Rd stacomiR/man/bmi.Rd stacomiR/man/calcmig.Rd stacomiR/man/calcule-BilanArgentee-method.Rd stacomiR/man/calcule-BilanMigration-method.Rd stacomiR/man/calcule-BilanMigrationConditionEnv-method.Rd stacomiR/man/calcule-BilanMigrationMult-method.Rd stacomiR/man/calcule-BilanMigrationPar-method.Rd stacomiR/man/calcule-Bilan_carlot-method.Rd stacomiR/man/calcule-Bilan_taille-method.Rd stacomiR/man/calcule.Rd stacomiR/man/charge-BilanAnnuels-method.Rd stacomiR/man/charge-BilanArgentee-method.Rd stacomiR/man/charge-BilanConditionEnv-method.Rd stacomiR/man/charge-BilanEspeces-method.Rd stacomiR/man/charge-BilanFonctionnementDC-method.Rd stacomiR/man/charge-BilanFonctionnementDF-method.Rd stacomiR/man/charge-BilanMigration-method.Rd stacomiR/man/charge-BilanMigrationInterAnnuelle-method.Rd stacomiR/man/charge-BilanMigrationMult-method.Rd stacomiR/man/charge-BilanOperation-method.Rd stacomiR/man/charge-Bilan_carlot-method.Rd stacomiR/man/charge-Bilan_poids_moyen-method.Rd stacomiR/man/charge-Bilan_stades_pigm-method.Rd stacomiR/man/charge-Bilan_taille-method.Rd stacomiR/man/charge-RefAnnee-method.Rd stacomiR/man/charge-RefCheckBox-method.Rd stacomiR/man/charge-RefChoix-method.Rd stacomiR/man/charge-RefCoe-method.Rd stacomiR/man/charge-RefDC-method.Rd stacomiR/man/charge-RefDF-method.Rd stacomiR/man/charge-RefListe-method.Rd stacomiR/man/charge-RefMsg-method.Rd stacomiR/man/charge-RefStades-method.Rd stacomiR/man/charge-RefStationMesure-method.Rd stacomiR/man/charge-RefTaxon-method.Rd stacomiR/man/charge-RefTextBox-method.Rd stacomiR/man/charge-Refpar-method.Rd stacomiR/man/charge-Refparqual-method.Rd stacomiR/man/charge-Refparquan-method.Rd stacomiR/man/charge.Rd stacomiR/man/charge_avec_filtre-RefMsg-method.Rd stacomiR/man/charge_avec_filtre-RefStades-method.Rd stacomiR/man/charge_avec_filtre-RefTaxon-method.Rd stacomiR/man/charge_avec_filtre-Refpar-method.Rd stacomiR/man/charge_avec_filtre-Refparqual-method.Rd stacomiR/man/charge_avec_filtre-Refparquan-method.Rd stacomiR/man/charge_avec_filtre.Rd stacomiR/man/charge_complement-Refparqual-method.Rd stacomiR/man/charge_complement.Rd stacomiR/man/chargecomplement-methods.Rd stacomiR/man/chargecsv.Rd stacomiR/man/choice-PasDeTemps-method.Rd stacomiR/man/choice-RefAnnee-method.Rd stacomiR/man/choice-RefCheckBox-method.Rd stacomiR/man/choice-RefChoix-method.Rd stacomiR/man/choice-RefDC-method.Rd stacomiR/man/choice-RefDF-method.Rd stacomiR/man/choice-RefHorodate-method.Rd stacomiR/man/choice-RefListe-method.Rd stacomiR/man/choice-RefStades-method.Rd stacomiR/man/choice-RefStationMesure-method.Rd stacomiR/man/choice-RefTaxon-method.Rd stacomiR/man/choice-RefTextBox-method.Rd stacomiR/man/choice-Refpar-method.Rd stacomiR/man/choice-Refparqual-method.Rd stacomiR/man/choice.Rd stacomiR/man/choice_c-BilanAnnuels-method.Rd stacomiR/man/choice_c-BilanArgentee-method.Rd stacomiR/man/choice_c-BilanFonctionnementDC-method.Rd stacomiR/man/choice_c-BilanFonctionnementDF-method.Rd stacomiR/man/choice_c-BilanMigration-method.Rd stacomiR/man/choice_c-BilanMigrationInterAnnuelle-method.Rd stacomiR/man/choice_c-BilanMigrationMult-method.Rd stacomiR/man/choice_c-Bilan_carlot-method.Rd stacomiR/man/choice_c-PasDeTempsJournalier-method.Rd stacomiR/man/choice_c-RefAnnee-method.Rd stacomiR/man/choice_c-RefDC-method.Rd stacomiR/man/choice_c-RefDF-method.Rd stacomiR/man/choice_c-RefHorodate-method.Rd stacomiR/man/choice_c-RefStades-method.Rd stacomiR/man/choice_c-RefTaxon-method.Rd stacomiR/man/choice_c-Refpar-method.Rd stacomiR/man/choice_c.Rd stacomiR/man/choicemult-PasDeTemps-method.Rd stacomiR/man/choicemult-RefDC-method.Rd stacomiR/man/choicemult-RefStades-method.Rd stacomiR/man/choicemult-RefTaxon-method.Rd stacomiR/man/choicemult.Rd stacomiR/man/coef_Durif.Rd stacomiR/man/connect-BilanAnnuels-method.Rd stacomiR/man/connect-BilanArgentee-method.Rd stacomiR/man/connect-BilanConditionEnv-method.Rd stacomiR/man/connect-BilanEspeces-method.Rd stacomiR/man/connect-BilanFonctionnementDC-method.Rd stacomiR/man/connect-BilanFonctionnementDF-method.Rd stacomiR/man/connect-BilanMigration-method.Rd stacomiR/man/connect-BilanMigrationInterAnnuelle-method.Rd stacomiR/man/connect-BilanMigrationMult-method.Rd stacomiR/man/connect-BilanOperation-method.Rd stacomiR/man/connect-Bilan_carlot-method.Rd stacomiR/man/connect-Bilan_poids_moyen-method.Rd stacomiR/man/connect-Bilan_stades_pigm-method.Rd stacomiR/man/connect-Bilan_taille-method.Rd stacomiR/man/createmessage-RefMsg-method.Rd stacomiR/man/createmessage.Rd stacomiR/man/currentDateDebut-PasDeTemps-method.Rd stacomiR/man/currentDateDebut.Rd stacomiR/man/currentDateFin-PasDeTemps-method.Rd stacomiR/man/currentDateFin.Rd stacomiR/man/envir_stacomi.Rd stacomiR/man/f_stade_Durif.Rd stacomiR/man/fn_EcritBilanJournalier.Rd stacomiR/man/fn_EcritBilanMensuel.Rd stacomiR/man/fn_table_per_dis.Rd stacomiR/man/fnstade.Rd stacomiR/man/fntablestade.Rd stacomiR/man/fun50.Rd stacomiR/man/funSousListeBilanMigrationPar.Rd stacomiR/man/fun_bilanMigrationMult.Rd stacomiR/man/fun_bilanMigrationMult_Overlaps.Rd stacomiR/man/fun_char_spe.Rd stacomiR/man/fun_weight_conversion.Rd stacomiR/man/funbarchart1DC.Rd stacomiR/man/funbarchart1DF.Rd stacomiR/man/funbarchartDC.Rd stacomiR/man/funbarchartDF.Rd stacomiR/man/funboxDC.Rd stacomiR/man/funboxDF.Rd stacomiR/man/funboxplotBilan_carlot.Rd stacomiR/man/funcalcbilan_stades_pigm.Rd stacomiR/man/funchartDC.Rd stacomiR/man/funchartDF.Rd stacomiR/man/fundat.Rd stacomiR/man/fundensityBilan_carlot.Rd stacomiR/man/fundist.Rd stacomiR/man/fungraph.Rd stacomiR/man/fungraphBilan_poids_moyen.Rd stacomiR/man/fungraphInteract_tail.Rd stacomiR/man/fungraph_civelle.Rd stacomiR/man/fungraph_env.Rd stacomiR/man/fungraphgg.Rd stacomiR/man/fungraphstades.Rd stacomiR/man/funout.Rd stacomiR/man/funphi.Rd stacomiR/man/funplotBilanArgentee.Rd stacomiR/man/funpointBilan_carlot.Rd stacomiR/man/funstat.Rd stacomiR/man/funstatJournalier.Rd stacomiR/man/funtable.Rd stacomiR/man/funtableBilanArgentee.Rd stacomiR/man/funtableBilan_carlot.Rd stacomiR/man/funtableBilan_tail.Rd stacomiR/man/funtableDC.Rd stacomiR/man/funtableDF.Rd stacomiR/man/funtitle_bilan_stades_pigm.Rd stacomiR/man/funtraitement_poids.Rd stacomiR/man/funtraitementdate.Rd stacomiR/man/getAnnees-PasDeTemps-method.Rd stacomiR/man/getAnnees.Rd stacomiR/man/getLibellesPas-PasDeTemps-method.Rd stacomiR/man/getLibellesPas.Rd stacomiR/man/getdateDebut-PasDeTemps-method.Rd stacomiR/man/getdateDebut.Rd stacomiR/man/getnoPasCourant-PasDeTemps-method.Rd stacomiR/man/getnoPasCourant.Rd stacomiR/man/getvalue-Refperiode-method.Rd stacomiR/man/getvalue.Rd stacomiR/man/graphdate.Rd stacomiR/man/graphe-methods.Rd stacomiR/man/hBilanConditionEnv.Rd stacomiR/man/hBilanEspeces.Rd stacomiR/man/hBilanEspecescalc.Rd stacomiR/man/hBilanMigration.Rd stacomiR/man/hBilanMigrationConditionEnv.Rd stacomiR/man/hBilanMigrationInterAnnuelle.Rd stacomiR/man/hBilanMigrationMult.Rd stacomiR/man/hBilanMigrationPar.Rd stacomiR/man/hBilan_carlot.Rd stacomiR/man/hCamembert.Rd stacomiR/man/hDC.Rd stacomiR/man/hDF.Rd stacomiR/man/hDFDC.Rd stacomiR/man/hOPE.Rd stacomiR/man/hSt.Rd stacomiR/man/hTableBilanEspeces.Rd stacomiR/man/hTableBilanMigration.Rd stacomiR/man/hTableBilanMigrationMult.Rd stacomiR/man/hTail.Rd stacomiR/man/hbarplotBilanAnnuels.Rd stacomiR/man/hbilA.Rd stacomiR/man/hbilanConditionEnvgraph.Rd stacomiR/man/hbilanMigrationConditionEnvcalc.Rd stacomiR/man/hbilanMigrationConditionEnvgraph.Rd stacomiR/man/hbilanMigrationMult_graph.Rd stacomiR/man/hbilanMigrationMultcalc.Rd stacomiR/man/hbilanMigrationMultgraph2.Rd stacomiR/man/hbilanMigrationMultgraph3.Rd stacomiR/man/hbilanMigrationParcalc.Rd stacomiR/man/hbilanMigrationPargraph.Rd stacomiR/man/hbilanMigrationPargraph2.Rd stacomiR/man/hbilanMigrationParstat.Rd stacomiR/man/hbilanMigrationcalc.Rd stacomiR/man/hbilanMigrationgraph.Rd stacomiR/man/hbilanMigrationgraph2.Rd stacomiR/man/hbilanMigrationwrite.Rd stacomiR/man/hfungraphstades.Rd stacomiR/man/hgraphBilanMigrationInterAnnuelle.Rd stacomiR/man/hgraphBilanMigrationInterAnnuelle2.Rd stacomiR/man/hgraphBilanMigrationInterAnnuelle3.Rd stacomiR/man/hgraphBilanMigrationInterAnnuelle4.Rd stacomiR/man/hgraphBilanMigrationInterAnnuelle5.Rd stacomiR/man/hgraphBilanMigrationInterAnnuelle7.Rd stacomiR/man/houtBilanMigration.Rd stacomiR/man/houtBilanMigrationMult.Rd stacomiR/man/houtDC.Rd stacomiR/man/houtDF.Rd stacomiR/man/hpds.Rd stacomiR/man/hplotBilanAnnuels.Rd stacomiR/man/hsilver.Rd stacomiR/man/hsummaryBilanMigrationInterannuelle.Rd stacomiR/man/htodo.Rd stacomiR/man/husr.Rd stacomiR/man/hxtableBilanAnnuels.Rd stacomiR/man/interface_BilanAnnuels.Rd stacomiR/man/interface_BilanArgentee.Rd stacomiR/man/interface_BilanEspeces.Rd stacomiR/man/interface_BilanFonctionnementDC.Rd stacomiR/man/interface_BilanFonctionnementDF.Rd stacomiR/man/interface_BilanMigration.Rd stacomiR/man/interface_BilanMigrationConditionEnv.Rd stacomiR/man/interface_BilanMigrationInterAnnuelle.Rd stacomiR/man/interface_BilanMigrationMult.Rd stacomiR/man/interface_BilanMigrationPar.Rd stacomiR/man/interface_BilanPoidsMoyen.Rd stacomiR/man/interface_Bilan_carlot.Rd stacomiR/man/interface_Bilan_stades_pigm.Rd stacomiR/man/interface_ConditionEnv.Rd stacomiR/man/interface_chooselang.Rd stacomiR/man/interface_graphique.Rd stacomiR/man/messages.Rd stacomiR/man/msg.Rd stacomiR/man/mygtkProgressBar.Rd stacomiR/man/out.Rd stacomiR/man/plot-BilanAnnuels-missing-method.Rd stacomiR/man/plot-BilanArgentee-missing-method.Rd stacomiR/man/plot-BilanFonctionnementDC-ANY-method.Rd stacomiR/man/plot-BilanFonctionnementDF-ANY-method.Rd stacomiR/man/plot-BilanMigration-ANY-method.Rd stacomiR/man/plot-BilanMigrationInterAnnuelle-missing-method.Rd stacomiR/man/plot-BilanMigrationMult-ANY-method.Rd stacomiR/man/plot-BilanMigrationPar-ANY-method.Rd stacomiR/man/plot-Bilan_carlot-missing-method.Rd stacomiR/man/plot.Rd stacomiR/man/print-BilanArgentee-method.Rd stacomiR/man/print-BilanFonctionnementDC-method.Rd stacomiR/man/print-BilanFonctionnementDF-method.Rd stacomiR/man/print-BilanMigration-method.Rd stacomiR/man/print-BilanMigrationMult-method.Rd stacomiR/man/print-Bilan_carlot-method.Rd stacomiR/man/quitte.Rd stacomiR/man/setRefHorodate-RefHorodate-method.Rd stacomiR/man/setdateDebut-PasDeTemps-method.Rd stacomiR/man/setdateDebut.Rd stacomiR/man/split_per_day.Rd stacomiR/man/stacomi.Rd stacomiR/man/stacomiR-package.Rd stacomiR/man/suivant-PasDeTemps-method.Rd stacomiR/man/suivant.Rd stacomiR/man/summary-BilanArgentee-method.Rd stacomiR/man/summary-BilanFonctionnementDC-method.Rd stacomiR/man/summary-BilanFonctionnementDF-method.Rd stacomiR/man/summary-BilanMigration-method.Rd stacomiR/man/summary-BilanMigrationInterAnnuelle-method.Rd stacomiR/man/summary-BilanMigrationMult-method.Rd stacomiR/man/summary-Bilan_carlot-method.Rd stacomiR/man/supprime-BilanMigrationInterAnnuelle-method.Rd stacomiR/man/supprime.Rd stacomiR/man/surface.Rd stacomiR/man/validite_Annee.Rd stacomiR/man/validite_RefHorodate.Rd stacomiR/man/vector_to_listsql.Rd stacomiR/man/write_database.Rd stacomiR/man/xtable-BilanAnnuels-method.Rd

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