surrosurv: Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses
Version 1.1.16

Provides functions for the evaluation of surrogate endpoints when both the surrogate and the true endpoint are failure time variables. The approaches implemented are: (1) the two-step approach (Burzykowski et al, 2001) with a copula model (Clayton, Plackett, Hougaard) at the first step and either a linear regression of log-hazard ratios at the second step (either adjusted or not for measurement error); (2) mixed proportional hazard models estimated via mixed Poisson GLM.

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AuthorFederico Rotolo [aut, cre], Xavier Paoletti [ctr], Marc Buyse [ctr], Tomasz Burzykowski [ctr], Stefan Michiels [ctr]
Date of publication2017-05-06 13:29:09
MaintainerFederico Rotolo <federico.rotolo@gustaveroussy.fr>
LicenseGPL-2
Version1.1.16
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("surrosurv", repos="http://R-Forge.R-project.org")

Man pages

convergence: Assesses the convergence of fitted models for surrogacy...
gastadj: Individual data from the adjuvant GASTRIC meta-analysis
gastadv: Individual data from the advanced GASTRIC meta-analysis
loocv: Leave-one-trial-out cross-validation for treatment effect...
poissonize: Tranform survival data for fitting a Poisson model
simData: Generate survival times for two endpoints in a meta-analysis...
ste: Surrogate threshold effect
surrosurv: Fit and print the models for evaluating the surrogacy...
surrosurv-package: Evaluation of Failure Time Surrogate Endpoints in Individual...

Functions

confint.surrosurv Source code
convals Man page Source code
convergence Man page Source code
copuSurr Source code
find.sigma2 Source code
fitClayton Source code
fitHougaard Source code
fitPlackett Source code
format.methodNames Source code
gastadj Man page
gastadv Man page
kTau.clay Source code
kTau.houg Source code
kTau.plack Source code
loocv Man page Source code
loocv.data.frame Source code
loocv.surrosurv Man page Source code
margFits Source code
mloglik Source code
noSpP Source code
plot.loocvSurrosurv Man page Source code
plot.predictSurrosurv Man page Source code
plot.surrosurv Man page Source code
plotsson Man page Source code
poisSurr Source code
poissonize Man page Source code
predict.surrosurv Man page Source code
print.ciSurrosurv Source code
print.conv Source code
print.loocvSurrosurv Man page Source code
print.predictSurrosurv Man page Source code
print.steSurrosurv Man page Source code
print.surrosurv Man page Source code
simData Source code
simData.cc Man page
simData.mx Man page
simData.re Man page
ste Man page Source code
surrosurv Man page Source code
surrosurv-package Man page

Files

.Rinstignore
DESCRIPTION
NAMESPACE
NEWS
R
R/convergence.R
R/copulas_functions.R
R/loocv.R
R/poisson_functions.R
R/poissonize.R
R/predict.R
R/simData.R
R/surrosurv.R
TODO
build
build/partial.rdb
build/vignette.rds
data
data/gastadj.RData
data/gastadv.RData
inst
inst/doc
inst/doc/copulas.Rnw
inst/doc/copulas.pdf
inst/doc/surrosurv.pdf
inst/doc/surrosurv.pdf.asis
man
man/convergence.Rd
man/gastadj.Rd
man/gastadv.Rd
man/loocv.Rd
man/poissonize.Rd
man/simData.Rd
man/ste.Rd
man/surrosurv-package.Rd
man/surrosurv.Rd
vignettes
vignettes/copulas.Rnw
vignettes/figloocv-1.pdf
vignettes/figpoissonize-1.pdf
vignettes/figpredictions-1.pdf
vignettes/figsurvCurves-1.pdf
vignettes/refs.bib
vignettes/surrosurv.pdf.asis
vignettes/surrosurv.tex
surrosurv documentation built on May 21, 2017, 12:36 a.m.