plot.survRes: Plot a 'survRes' object

In surveillance: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

Plot a survRes object

Description

Plotting a (multivariate) survRes object (soft-deprecated), including the number of infected, the threshold for recognizing an outbreak, the alarm status and the outbreak status.

As of surveillance 1.20.0, legacy survRes objects are plotted via internal disProg2sts conversion and stsplot_time.

Usage

  ## S3 method for class 'survRes'
plot(x, method = x$control$name, disease = x$control$data,
     xaxis.years = TRUE, startyear = 2001, firstweek = 1,
     same.scale = TRUE, ...,
     main = paste0("Analysis of ", disease, " using ", method))

Arguments

x	object of class survRes
method	surveillance method to be used in title
disease	name of disease in title
xaxis.years	Boolean indicating whether to show a year-based x-axis
startyear, firstweek	(legacy arguments, ignored with a warning)
same.scale	if TRUE (default), all plots use the same ylim
...	further arguments passed to stsplot_time
main	the plot title is generated from the method and disease arguments if not specified otherwise

Examples

data(ha)
ctrl <- list(range = 209:290, b = 2, w = 6, alpha = 0.005)
plot(algo.bayes(aggregate(ha), control = ctrl))

surveillance documentation built on Nov. 4, 2024, 3 a.m.