varComp: Variance Component Models
Version 0.1-360

Variance component models: REML estimation, testing fixed effect contrasts through Satterthwaite or Kenward-Roger methods, testing the nullity of variance components through (linear or quadratic) score tests or likelihood ratio tests.

AuthorLong Qu (long.qu@wright.edu)
Date of publication2015-02-06 16:32:25
MaintainerLong Qu <long.qu@wright.edu>
LicenseGPL-3
Version0.1-360
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("varComp", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

anova.varComp: ANOVA-type analysis of fixed effect parameters
chibarsq: Chi-bar-square distribution with nonnegativity cone...
model.matrix.varComp: Extracting model matrices
safeseq: A "safer" seq
varComp-package: Variance Component Models
varComp.test: Tests for Nullity of Variance Components
varComp.test.control: Control of variance component testing
See all...

All man pages Function index File listing

Man pages

anova.varComp: ANOVA-type analysis of fixed effect parameters
chibarsq: Chi-bar-square distribution with nonnegativity cone...
cholRoot: Lower Cholesky Root
coef.varComp: Obtaining parameter estimates from a varComp object
formulas: Internal formula term manipulation functions
get.seed: Recording pseudo-random number seeds
is.formula: Check if an object is a formula
kernels: Kernel functions useful for genetic associations
logLik.varComp: Extracting Profiled Restricted Log Likelihood
minque: Minimum norm quadratic unbiased estimation
model.matrix.varComp: Extracting model matrices
normalizeTrace: Rescales a square matrix such that the trace is the same as...
print.varComp: Summary and printing of varComp objects
print.varComp.test: Print variance component test results
p.value.varComp.test: Extracting p-values
safeseq: A "safer" seq
symbols: Some symbols that might be used in formulas
varComp: Fitting variance component models
varComp.control: Functions controlling the model fitting of varComp
varComp-defunct: Defunct functions
varComp-internal: Internal functions not supposed to be called directly
varComp-notImplemented: Not-yet-implemented functions
varComp-package: Variance Component Models
varComp.test: Tests for Nullity of Variance Components
varComp.test.control: Control of variance component testing
vcov.varComp: Extracting Variance-Covariance Matrices
Wald.varComp: Wald-type tests for fixed effect parameters

Functions

AEI Man page
AM Man page Source code
AOI Man page
EI Man page
IBS Man page Source code
KR Man page
KR.varComp Man page Source code
Lin0 Man page Source code
LinScoreWeightingMethods Man page
Minkowski Man page Source code
OI Man page
PREML Man page
Polyk Man page Source code
Quad1 Man page Source code
V Man page
WAI Man page
am Man page Source code
anova.varComp Man page Source code
callList2terms Man page Source code
cholRoot Man page Source code
coef.varComp Man page Source code
colon Man page
doFit.varComp Man page Source code
fixed.effects Man page Man page
fixef Man page Man page
fixef.varComp Man page Man page Source code
get.seed Man page Source code
gradFunc Man page
hess Man page
ibs Man page Source code
informationTypes Man page
is.formula Man page Source code
lin0 Man page Source code
logLik.varComp Man page Source code
mchibarsq Man page Source code
minkowski Man page Source code
minque Man page Source code
model.matrix.varComp Man page Source code
nlminb.control Man page Source code
normalizeTrace Man page Source code
obj Man page
obj2 Man page
p.value Man page Source code
p.value.default Man page
p.value.htest Man page Source code
p.value.varComp.test Man page Source code
p.value.varCompFixEf Man page Source code
pchibarsq Man page Source code
plus Man page
polyk Man page Source code
preprocPREML Man page
print.varComp Man page Source code
print.varComp.test Man page Source code
print.varCompFixEf Man page Source code
quad1 Man page Source code
safeseq Man page Source code
satterth Man page
satterth.varComp Man page Source code
score Man page
sortTerm Man page Source code
splitTerm Man page Source code
star Man page
summary.varComp Man page Source code
tilde Man page
updateDenom Man page
updateLI Man page
updateLIkLI Man page
updateLIy Man page
updateNegGrad Man page
updateNegHess Man page
updateNums Man page
updateNums2 Man page
updateNumsPart Man page
updateTr1 Man page
updateTr2 Man page
varComp Man page Source code
varComp-package Man page
varComp.LinScore.LC12 Man page Source code
varComp.LinScore.LC12Boundary Man page Source code
varComp.LinScore.Normal Man page Source code
varComp.LinScore.SSAS155 Man page Source code
varComp.LinScore.Satterthwaite Man page Source code
varComp.LinScore.approximation Man page Source code
varComp.LinScore.beta Man page Source code
varComp.LinScore.cumulant3 Man page Source code
varComp.LinScore.pboot Man page Source code
varComp.LinScore.saddlepoint Man page Source code
varComp.LinScore.test Man page Source code
varComp.RLRT.test Man page Source code
varComp.RWD88.test Man page Source code
varComp.SS95.test Man page Source code
varComp.VM03.test Man page Source code
varComp.Wald.test Man page Source code
varComp.control Man page Source code
varComp.fit Man page Source code
varComp.test Man page Source code
varComp.test.2modelDoTest Man page Source code
varComp.test.Common Man page
varComp.test.altDoTest Man page Source code
varComp.test.formula Man page Source code
varComp.test.nulDoTest Man page Source code
varComp.test.varComp Man page Source code
varCompScoreTests Man page
varCompTest.control Man page Source code
varCompTests Man page
vcov.varComp Man page Source code
wchibarsq Man page Source code

Files

DESCRIPTION
INDEX
NAMESPACE
R
R/KR.varComp.R
R/anova.varComp.R
R/coef.varComp.R
R/fixef.varComp.R
R/formulas.R
R/kernels.R
R/logLik.varComp.R
R/minque.R
R/model.matrix.varComp.R
R/p.value.R
R/pchibarsq.R
R/print.varComp.R
R/print.varComp.test.R
R/satterth.R
R/varComp-const.R
R/varComp-defunct.R
R/varComp-internal.R
R/varComp-notImplemented.R
R/varComp-utilities.R
R/varComp.LinScore.Normal.R
R/varComp.LinScore.SSAS155.R
R/varComp.LinScore.Satterthwaite.R
R/varComp.LinScore.test.R
R/varComp.R
R/varComp.RLRT.test.R
R/varComp.SS95.test.R
R/varComp.VM03.test.R
R/varComp.test.R
R/varComp.test.control.R
R/vcov.varComp.R
man
man/Wald.varComp.Rd
man/anova.varComp.Rd
man/chibarsq.Rd
man/cholRoot.Rd
man/coef.varComp.Rd
man/formulas.Rd
man/get.seed.Rd
man/is.formula.Rd
man/kernels.Rd
man/logLik.varComp.Rd
man/minque.Rd
man/model.matrix.varComp.Rd
man/normalizeTrace.Rd
man/p.value.varComp.test.Rd
man/print.varComp.Rd
man/print.varComp.test.Rd
man/safeseq.Rd
man/symbols.Rd
man/varComp-defunct.Rd
man/varComp-internal.Rd
man/varComp-notImplemented.Rd
man/varComp-package.Rd
man/varComp.Rd
man/varComp.control.Rd
man/varComp.test.Rd
man/varComp.test.control.Rd
man/vcov.varComp.Rd
varComp documentation built on May 21, 2017, 1:05 a.m.

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