Global functions | |
---|---|
GenomeInfo | Man page |
GenomeInfo-class | Man page |
MapFilterProbe | Man page |
MapFilterProbe-class | Man page |
MapMar | Source code |
MapMarImp | Source code |
WaveMarEstVarJ | Source code |
WaveTilingFeatureSet | Man page |
WaveTilingFeatureSet-class | Man page |
WfmFit | Man page |
WfmFit-class | Man page |
WfmFitCircadian | Man page |
WfmFitCircadian-class | Man page |
WfmFitCustom | Man page |
WfmFitCustom-class | Man page |
WfmFitFactor | Man page |
WfmFitFactor-class | Man page |
WfmFitTime | Man page |
WfmFitTime-class | Man page |
WfmInf | Man page |
WfmInf-class | Man page |
WfmInfCompare | Man page |
WfmInfCompare-class | Man page |
WfmInfCustom | Man page |
WfmInfCustom-class | Man page |
WfmInfEffects | Man page |
WfmInfEffects-class | Man page |
WfmInfMeans | Man page |
WfmInfMeans-class | Man page |
WfmInfOverallMean | Man page |
WfmInfOverallMean-class | Man page |
addPheno | Man page |
addPheno,WaveTilingFeatureSet-method | Man page |
bgCorrQn | Man page |
bgCorrQn,WaveTilingFeatureSet-method | Man page |
cel2TilingFeatureSet | Man page Source code |
extractChrFromFasta | Source code |
filterOverlap | Man page |
filterOverlap,WaveTilingFeatureSet-method | Man page |
getAlpha | Man page |
getAlpha,WfmInf-method | Man page |
getBetaWav | Man page |
getBetaWav,WfmFit-method | Man page |
getChromosome | Man page |
getChromosome,MapFilterProbe-method | Man page |
getChromosome,WfmFit-method | Man page |
getDataOrigSpace | Man page |
getDataOrigSpace,WfmFit-method | Man page |
getDataWaveletSpace | Man page |
getDataWaveletSpace,WfmFit-method | Man page |
getDelta | Man page |
getDelta,WfmInf-method | Man page |
getDesignMatrix | Man page |
getDesignMatrix,WfmFit-method | Man page |
getEff | Man page |
getEff,WfmInf-method | Man page |
getF | Man page |
getF,WfmFit-method | Man page |
getFDR | Man page |
getFDR,WfmInf-method | Man page |
getFilteredIndices | Man page |
getFilteredIndices,MapFilterProbe-method | Man page |
getGenomeInfo | Man page |
getGenomeInfo,WfmFit-method | Man page |
getGenomeInfo,WfmInf-method | Man page |
getGenomicRegions | Man page |
getGenomicRegions,WfmInf-method | Man page |
getGroupNames | Man page |
getGroupNames,WaveTilingFeatureSet-method | Man page |
getKj | Man page |
getKj,WfmFit-method | Man page |
getMaxPos | Man page |
getMaxPos,WfmFit-method | Man page |
getMinPos | Man page |
getMinPos,WfmFit-method | Man page |
getNoGroups | Man page |
getNoGroups,WaveTilingFeatureSet-method | Man page |
getNoLevels | Man page |
getNoLevels,WfmFit-method | Man page |
getNoProbes | Man page |
getNoProbes,WfmFit-method | Man page |
getNonAnnotatedRegions | Man page |
getNonAnnotatedRegions,WfmFit,WfmInf-method | Man page |
getPhenoInfo | Man page |
getPhenoInfo,WfmFit-method | Man page |
getPosition | Man page |
getPosition,MapFilterProbe-method | Man page |
getPrior | Man page |
getPrior,WfmFit-method | Man page |
getProbePosition | Man page |
getProbePosition,WfmFit-method | Man page |
getRegions | Man page |
getRegions,WfmInf-method | Man page |
getReplics | Man page |
getReplics,WaveTilingFeatureSet-method | Man page |
getSigGenes | Man page |
getSigGenes,WfmFit,WfmInf-method | Man page |
getSigProbes | Man page |
getSigProbes,WfmInf-method | Man page |
getSmoothPar | Man page |
getSmoothPar,WfmFit-method | Man page |
getStrand | Man page |
getStrand,MapFilterProbe-method | Man page |
getStrand,WfmFit-method | Man page |
getTwoSided | Man page |
getTwoSided,WfmInf-method | Man page |
getVarBetaWav | Man page |
getVarBetaWav,WfmFit-method | Man page |
getVarEff | Man page |
getVarEff,WfmInf-method | Man page |
getVarEps | Man page |
getVarEps,WfmFit-method | Man page |
getVarF | Man page |
getVarF,WfmFit-method | Man page |
getWaveletFilter | Man page |
getWaveletFilter,WfmFit-method | Man page |
initialize,GenomeInfo-method | Man page |
initialize,MapFilterProbe-method | Man page |
initialize,WaveTilingFeatureSet-method | Man page |
initialize,WfmFit-method | Man page |
initialize,WfmFitCircadian-method | Man page |
initialize,WfmFitCustom-method | Man page |
initialize,WfmFitFactor-method | Man page |
initialize,WfmFitTime-method | Man page |
initialize,WfmInf-method | Man page |
initialize,WfmInfCompare-method | Man page |
initialize,WfmInfCustom-method | Man page |
initialize,WfmInfEffects-method | Man page |
initialize,WfmInfMeans-method | Man page |
initialize,WfmInfOverallMean-method | Man page |
makeContrasts | Man page Source code |
makeDesign | Man page Source code |
makeNewAnnotationTextOverlay | Source code |
makeNewAnnotationTrack | Source code |
makeNewTranscriptRectangleOverlay | Source code |
normVec | Source code |
plotWfm | Man page |
plotWfm,WfmFit,WfmInf-method | Man page |
pm2mm | Source code |
pmStrand,WaveTilingFeatureSet-method | Man page |
selectProbesFromFilterOverlap | Man page |
selectProbesFromFilterOverlap,MapFilterProbe-method | Man page |
selectProbesFromTilingFeatureSet | Man page |
selectProbesFromTilingFeatureSet,WaveTilingFeatureSet-method | Man page |
show,GenomeInfo-method | Man page |
show,MapFilterProbe-method | Man page |
show,WaveTilingFeatureSet-method | Man page |
show,WfmFit-method | Man page |
show,WfmFitCircadian-method | Man page |
show,WfmFitCustom-method | Man page |
show,WfmFitFactor-method | Man page |
show,WfmFitTime-method | Man page |
show,WfmInf-method | Man page |
show,WfmInfCompare-method | Man page |
show,WfmInfCustom-method | Man page |
show,WfmInfEffects-method | Man page |
show,WfmInfMeans-method | Man page |
show,WfmInfOverallMean-method | Man page |
wave.backtransform | Source code |
wave.backtransformK | Source code |
wave.transform | Source code |
wfm.fit | Man page |
wfm.fit,WaveTilingFeatureSet-method | Man page |
wfm.inference | Man page |
wfm.inference,WfmFit-method | Man page |
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