addPheno: Add phenotypic info to 'WaveTilingFeatureSet'

In waveTiling: Wavelet-Based Models for Tiling Array Transcriptome Analysis

Description

Function to add phenotypic information such as sample names or group names to a WaveTilingFeatureSet-class object

Usage

addPheno(object, noGroups, groupNames, replics, ...)

Arguments

object	object of class WaveTilingFeatureSet
noGroups	Number of groups in the tiling array experiment
groupNames	Vector containing the group or sample names in the tiling array experiment. The vector length should be equal to the indicated number of groups.
replics	Numeric vector containing the number of replicates for each group. The vector length should be equal to the indicated number of groups.
...	other arguments

Value

object of class WaveTilingFeatureSet annotated with the phenotypic data

Author(s)

Kristof De Beuf <[e-mail]>

Examples

## Not run: 
  data(leafdev)
  leafdev <- as(leafdev,"WaveTilingFeatureSet")
  leafdev <- addPheno(leafdev,noGroups=6,groupNames=c("day8","day9","day10","day11","day12","day13"),replics=rep(3,6))
  leafdev

## End(Not run)

waveTiling documentation built on May 2, 2019, 4:46 p.m.