bkaczkowski/xcore: xcore expression regulators inference

Package: xcore
Title: xcore expression regulators inference
Version: 1.1.5

remap_mini: xcore example molecular signatures

R: xcore example molecular signatures
const macros = { "\\R": "\\textsf{R}", "\\code": "\\texttt"};
function

rinderpest_mini: xcore example expression data

R: xcore example expression data
const macros = { "\\R": "\\textsf{R}", "\\code": "\\texttt"};
function

mcjmigdal/xcoredata: data package for xcore

Package: xcoredata
Type: Package
Title: data package for xcore

tests/testthat.R:

library(testthat)
library(xcore)
test_check("xcore")

R/mlr_utils.R:

mlr.add.int <- function(Xcore, X) { # TODO: this is buggy, seems to include binary columns twice
Xret <- array(NA

R/data.R:

#' xcore example expression data
#'
#' Expression data intended for use in xcore vignette and examples. It is build

README.md:

# xcore
xcore is an R package for transcription factor activity modeling
based on known molecular signatures

R/zzz.R:

xcores <- ux$get_cores()
if (xcores > 1) xcores <- 2
options("pinstimation.parallel.cores" = xcores

data-raw/rinderpest_mini.R:

#!/usr/bin/env R
# create rinderpest_mini dataset to use as an example dataset in xcore
devtools::load_all()

R/zzz.R:

# cores is larger than 1, all but one core are used for parallel
# processing.
xcores <- ux$get_cores

vignettes/xcore_vignette.Rmd:

title: "xcore vignette"
author: "migdal"
package: xcore