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tests/testthat/test_metRead-Write.R:

GITHUB
ethevenot/metabolis: Metabolomics Data Analysis

")
testthat::expect_identical(names(prometMset1), c("metabo", "proteo"))
testthat::expect_equal(exprs(prometMset1[["metabo

metRead: metRead

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ethevenot/metabolis: Metabolomics Data Analysis

")),
proteo = list(dataMatrix.tsvC = file.path(prometDirC, "proteo", "dataMatrix.tsv

R/data_TMixClust.R:

GITHUB
cbg-ethz/TMixClust: Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

P, Telenti A, Beerenwinkel N, Ciuffi A. (2017) Dynamics of
#' Proteo-Transcriptomic Response to HIV-1 Infection

R/data_TMixClust.R:

BIOC
TMixClust: Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

P, Telenti A, Beerenwinkel N, Ciuffi A. (2017) Dynamics of
#' Proteo-Transcriptomic Response to HIV-1 Infection

best_clust_toy_obj: TMixClust object containing the optimal clustering solution

BIOC
TMixClust: Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

) Dynamics of
Proteo-Transcriptomic Response to HIV-1 Infection.
Examples

best_clust_toy_obj: TMixClust object containing the optimal clustering solution

GITHUB
cbg-ethz/TMixClust: Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

) Dynamics of
Proteo-Transcriptomic Response to HIV-1 Infection.
Examples

ethevenot/metabolis: Metabolomics Data Analysis

GITHUB
ethevenot/metabolis: Metabolomics Data Analysis

Package: metabolis
Type: Package
Title: Metabolomics Data Analysis

inst/extdata/promet/proteo/dataMatrix.tsv
inst/extdata/promet/proteo/sampleMetadata.tsv

best_clust_yeast_obj: TMixClust object containing the optimal clustering solution

GITHUB
cbg-ethz/TMixClust: Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

Proteo-Transcriptomic Response to HIV-1 Infection.
Examples
# Load the optimal clustering solution for the yeast

toy_data_df: Simulated time-series gene expression data

BIOC
TMixClust: Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

Proteo-Transcriptomic Response to HIV-1 Infection.
Examples
# Load the toy time series data provided