chrnames: Pull out the chromosome names from a cross
GITHUB
byandell/qtl: Tools for analyzing QTL experiments
Description
Pull out the chromosome names from a cross object as one big vector.
Usage
Description
Pull out the chromosome names from a cross object as one big vector.
Usage
chromosome names
Usage
chrnames(genome)
a cross
Description
Pull out the chromosome names from a cross object as one big vector.
a cross
Description
Pull out the chromosome names from a cross object as one big vector.
chromosome.
Usage
chrNames(object)
chromosome names
Usage
chrnames(genome)
list of unique chromosome names
Usage
chrNames(object)
R: Chromosome names method for ranged objects
chrNames,RangedData-methodR Documentation
Chromosome names method
arguments in chromosome 1", {
chrName = 3
startPosition = 49359145(nsSNPfinder)
test_that("invalid input1: wrong chromosome name", {
chrName = 30
(nsSNPfinder)
test_that("invalid input1: wrong chromosome name", {
chrName = 25
fixChromosomeNames <- function(chrnames)
#capital to small
chrnames <- paste0("chr", chrnames)
fixChromosomeNames <- function(chrnames)
#capital to small
chrnames <- paste0("chr", chrnames)
chrnames<- strsplit(needtochanges[indexTochange],'chr')
chrnames<- unlist(lapply(chrnames, function(x) x[2]))
needtochanges
test_that("invalid input1: incorrect chromosome name", {
chrName = 'r'
geneName = 'RHOA', snpNames=NULL, aggregateBy=NULL, filterBy=NULL, chrName=NULL) {
if (is.null(snpNames) & is.null(aggregateBy
mark (markOverCMA)
#' @param chrName character, defaults to "B", chr. name(s) to duplicate mark (markOverCMA)
#' @param
(listOfdfChromSize)[i]
dup_chr <- any(duplicated(listOfdfChromSize[[i]]$chrName))
if (dup_chr == FALSE
names into standard UCSC naming convention "chrX"
.checkChrNames=function(chrNames){
# convert names to character
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.
