chrNames-methods: Get list of unique chromosome names

In genoset: A RangedSummarizedExperiment with methods for copy number analysis

Description

Get list of unique chromosome names

Usage

chrNames(object)

## S4 method for signature 'GenoSet'
chrNames(object)

## S4 method for signature 'GenomicRanges'
chrNames(object)

chrNames(object) <- value

## S4 replacement method for signature 'GenoSet'
chrNames(object) <- value

## S4 replacement method for signature 'GenomicRanges'
chrNames(object) <- value

Arguments

object	GenomicRanges or GenoSet
value	return value of chrNames

Value

character vector with names of chromosomes

Examples

  data(genoset,package='genoset')
  chrNames(genoset.ds) # c('chr1','chr3','chrX')
  chrNames(rowRanges(genoset.ds))  # The same
  chrNames(genoset.ds) = sub('^chr','',chrNames(genoset.ds))

genoset documentation built on Nov. 8, 2020, 6:07 p.m.