API for genoset
A RangedSummarizedExperiment with methods for copy number analysis

Global functions
.do_rledf_range_summary Man page
.do_rledf_views Man page
GenoSet Man page Source code
GenoSet-class Man page
GenoSetOrGenomicRanges-class Man page
RleDataFrame Man page Source code
RleDataFrame-class Man page
RleDataFrame-views Man page
[,GenoSet,ANY-method Man page
[<-,GenoSet,ANY,ANY,ANY-method Man page
as.matrix,RleDataFrame-method Man page
baf2mbaf Man page Source code
boundingIndices Man page Source code
boundingIndicesByChr Man page Source code
bounds2Rle Man page Source code
calcGC Man page Source code
calcGC2 Man page Source code
chr Man page
chr,GenoSet-method Man page
chr,GenomicRanges-method Man page
chrIndices Man page
chrIndices,GenoSetOrGenomicRanges-method Man page
chrInfo Man page
chrInfo,GenoSetOrGenomicRanges-method Man page
chrNames Man page
chrNames,GenoSet-method Man page
chrNames,GenomicRanges-method Man page
chrNames<- Man page
chrNames<-,GenoSet-method Man page
chrNames<-,GenomicRanges-method Man page
chrOrder Man page Source code
chrPartitioning Man page Source code
cn2lr Man page
cn2lr,DataFrame-method Man page
cn2lr,matrix-method Man page
cn2lr,numeric-method Man page
coerce,RleDataFrame,matrix-method Man page
colMeans,DataFrame-method Man page
colMeans,RleDataFrame-method Man page
colSums,RleDataFrame-method Man page
do_rledf_range_summary Source code
do_rledf_views Source code
fixSegNAs Man page Source code
gcCorrect Man page Source code
genoPlot Man page
genoPlot,GenoSetOrGenomicRanges,ANY-method Man page
genoPlot,numeric,Rle-method Man page
genoPlot,numeric,numeric-method Man page
genoPos Man page
genoPos,GenoSetOrGenomicRanges-method Man page
genome Man page
genomeAxis Man page Source code
genoset Man page
genoset-datasets Man page
genoset-package Man page
genoset.ds Man page
isGenomeOrder Man page Source code
lengths,GenoSet-method Man page
lr2cn Man page Source code
modeCenter Man page Source code
nrow,GenomicRanges-method Man page
numCallable Man page Source code
pos,GenoSetOrGenomicRanges-method Man page
rangeColMeans Man page Source code
rangeMaxs Man page
rangeMaxs,RleDataFrame-method Man page
rangeMeans Man page
rangeMeans,RleDataFrame-method Man page
rangeMeans,matrix-method Man page
rangeMeans,numeric-method Man page
rangeMins Man page
rangeMins,RleDataFrame-method Man page
rangeSampleMeans Man page Source code
rangeSegMeanLength Man page Source code
rangeSegMeanLength,GRanges,data.frame-method Man page
rangeSegMeanLength,GRanges,list-method Man page
rangeSums Man page
rangeSums,RleDataFrame-method Man page
rangeWhichMaxs Man page
rangeWhichMaxs,RleDataFrame-method Man page
rangeWhichMins Man page
rangeWhichMins,RleDataFrame-method Man page
rbindDataframe Man page Source code
readGenoSet Man page Source code
rle_range_means Source code
rle_view_maxs Source code
rle_view_means Source code
rle_view_mins Source code
rle_view_sums Source code
rle_view_which_maxs Source code
rle_view_which_mins Source code
rowMeans,RleDataFrame-method Man page
rowSums,RleDataFrame-method Man page
runCBS Man page Source code
segPairTable Man page
segPairTable,DataFrame,DataFrame-method Man page
segPairTable,Rle,Rle-method Man page
segTable Man page
segTable,DataFrame-method Man page
segTable,Rle-method Man page
segs2Granges Man page Source code
segs2Rle Man page Source code
segs2RleDataFrame Man page Source code
show,RleDataFrame-method Man page
test Source code
toGenomeOrder Man page Source code
genoset documentation built on Nov. 17, 2017, 9:22 a.m.