bounds2Rle: Convert bounding indices into a Rle

Description Usage Arguments Value See Also

View source: R/bounds.R

Description

Given a matrix of first/last indices, like from boundingIndicesByChr, and values for each range, convert to a Rle. This function takes the expected length of the Rle, n, so that any portion of the full length not covered by a first/last range will be a run with the value NA. This is typical in the case where data is segmented with CBS and some of the data to be segmented is NA.

Usage

1
bounds2Rle(bounds, values, n)

Arguments

bounds

matrix, two columns, with first and last index, like from boundingIndicesByChr

values

ANY, some value to be associated with each range, like segmented copy number.

n

integer, the expected length of the Rle, i.e. the number of features in the genome/target ranges processed by boundingIndicesByChr.

Value

Rle

See Also

Other "segmented data": rangeSegMeanLength, runCBS, segPairTable, segTable, segs2Granges, segs2RleDataFrame, segs2Rle


genoset documentation built on Nov. 17, 2017, 9:22 a.m.