Description Usage Arguments Value See Also

Given a matrix of first/last indices, like from boundingIndicesByChr, and values for each range, convert to a Rle. This function takes the expected length of the Rle, n, so that any portion of the full length not covered by a first/last range will be a run with the value NA. This is typical in the case where data is segmented with CBS and some of the data to be segmented is NA.

1 | ```
bounds2Rle(bounds, values, n)
``` |

`bounds` |
matrix, two columns, with first and last index, like from boundingIndicesByChr |

`values` |
ANY, some value to be associated with each range, like segmented copy number. |

`n` |
integer, the expected length of the Rle, i.e. the number of features in the genome/target ranges processed by boundingIndicesByChr. |

Rle

Other "segmented data": `rangeSegMeanLength`

,
`runCBS`

, `segPairTable`

,
`segTable`

, `segs2Granges`

,
`segs2RleDataFrame`

, `segs2Rle`

genoset documentation built on May 2, 2018, 3:36 a.m.

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