Set a GRanges or GenoSet to genome order
Returns a re-ordered object sorted by chromosome and start position. If strict=TRUE, then chromosomes must be in order specified by chrOrder. If ds is already ordered, no re-ordering is done. Therefore, checking order with isGenomeOrder, is unnecessary if order will be corrected if isGenomeOrder is FALSE.
toGenomeOrder(ds, strict = TRUE)
GenoSet or GRanges
logical, should chromosomes be in order specified by chrOrder?
toGenomeOrder for GRanges differs from sort in that it orders by chromsome and start position only, rather than chromsome, strand, start, and width.
Other "genome ordering":
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