Files in genoset
A RangedSummarizedExperiment with methods for copy number analysis

DESCRIPTION
NAMESPACE
R
R/RleDataFrame-class.R R/RleDataFrame-methods.R R/bounds.R R/genoset-class.R R/ordering.R R/plots.R R/rangeSummaries.R R/segments.R R/test_genoset_package.R R/utils.R
TODO
build
build/vignette.rds
data
data/genoset.RData
inst
inst/NEWS
inst/NEWS.old
inst/doc
inst/doc/genoset.R inst/doc/genoset.Rmd
inst/doc/genoset.html
inst/scripts
inst/scripts/make.fake.genoset.data.R
inst/unitTests
inst/unitTests/test_DataFrame.R inst/unitTests/test_RleDataFrame-views.R inst/unitTests/test_bounds.R inst/unitTests/test_c_utils.R inst/unitTests/test_genoset-class.R inst/unitTests/test_locations.R inst/unitTests/test_plots.R inst/unitTests/test_segments.R inst/unitTests/test_utils.R
man
man/GenoSet-class.Rd man/RleDataFrame-class.Rd man/RleDataFrame-views.Rd man/baf2mbaf.Rd man/boundingIndices.Rd man/boundingIndicesByChr.Rd man/bounds2Rle.Rd man/calcGC.Rd man/calcGC2.Rd man/chr-methods.Rd man/chrIndices-methods.Rd man/chrInfo-methods.Rd man/chrNames-methods.Rd man/chrOrder.Rd man/chrPartitioning.Rd man/cn2lr-methods.Rd man/do_rledf_range_summary.Rd man/do_rledf_views.Rd man/fixSegNAs.Rd man/gcCorrect.Rd man/genoPlot-methods.Rd man/genoPos-methods.Rd man/genome.Rd man/genomeAxis.Rd man/genomicranges-methods.Rd man/genoset-dataset.Rd man/genoset-methods.Rd man/genoset-package.Rd man/genoset-subset.Rd man/isGenomeOrder.Rd man/lr2cn.Rd man/modeCenter.Rd man/numCallable.Rd man/pos-methods.Rd man/rangeSampleMeans.Rd man/rangeSegMeanLength-methods.Rd man/rbindDataframe.Rd man/readGenoSet.Rd man/runCBS.Rd man/segPairTable-methods.Rd man/segTable-methods.Rd man/segs2Granges.Rd man/segs2Rle.Rd man/segs2RleDataFrame.Rd man/toGenomeOrder.Rd
src
src/bounds.c
src/genoset.h
src/init.c
src/rangeSummaries.c
src/utils.c
tests
tests/prove.R
tests/prove.Rout.save
vignettes
vignettes/genoset.Rmd
genoset documentation built on May 31, 2017, 3:48 p.m.