Files in genoset
A RangedSummarizedExperiment with methods for copy number analysis
TODO
NAMESPACE
DESCRIPTION
build/vignette.rds
src/init.c
src/rangeSummaries.c
src/bounds.c
src/utils.c
src/genoset.h
data/genoset.RData
R/RleDataFrame-class.R
R/utils.R
R/genoset-class.R
R/ordering.R
R/bounds.R
R/rangeSummaries.R
R/segments.R
R/plots.R
R/RleDataFrame-methods.R
vignettes/genoset.Rmd
man/genome.Rd
man/genoset-methods.Rd
man/modeCenter.Rd
man/calcGC.Rd
man/pos-methods.Rd
man/toGenomeOrder.Rd
man/chrIndices-methods.Rd
man/runCBS.Rd
man/boundingIndicesByChr.Rd
man/chrOrder.Rd
man/genomicranges-methods.Rd
man/segs2Granges.Rd
man/genoset-package.Rd
man/segPairTable-methods.Rd
man/chr-methods.Rd
man/numCallable.Rd
man/do_rledf_views.Rd
man/rbindDataframe.Rd
man/chrInfo-methods.Rd
man/genoPos-methods.Rd
man/isGenomeOrder.Rd
man/genoset-dataset.Rd
man/bounds2Rle.Rd
man/boundingIndices.Rd
man/segs2Rle.Rd
man/genoPlot-methods.Rd
man/GenoSet-class.Rd
man/lr2cn.Rd
man/baf2mbaf.Rd
man/genomeAxis.Rd
man/RleDataFrame-views.Rd
man/genoset-subset.Rd
man/chrNames-methods.Rd
man/gcCorrect.Rd
man/chrPartitioning.Rd
man/calcGC2.Rd
man/RleDataFrame-class.Rd
man/rangeSegMeanLength-methods.Rd
man/do_rledf_range_summary.Rd
man/rangeSampleMeans.Rd
man/segTable-methods.Rd
man/fixSegNAs.Rd
man/segs2RleDataFrame.Rd
man/cn2lr-methods.Rd
man/readGenoSet.Rd
tests/testthat.R
tests/testthat/test_c_utils.R
tests/testthat/test_DataFrame.R
tests/testthat/test_bounds.R
tests/testthat/test_RleDataFrame-views.R
tests/testthat/test_segments.R
tests/testthat/test_utils.R
tests/testthat/test_genoset-class.R
tests/testthat/test_locations.R
tests/testthat/test_plots.R
inst/NEWS.old
inst/NEWS
inst/doc/genoset.html
inst/doc/genoset.Rmd
inst/doc/genoset.R
inst/scripts/make.fake.genoset.data.R
