isGenomeOrder: Check if a GRanges orGenoSet is in genome order
In genoset: A RangedSummarizedExperiment with methods for copy number analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Checks that rows in each chr are ordered by start. If strict=TRUE, then chromosomes
must be in order specified by chrOrder. isGenomeOrder for GRanges differs from order
in that it orders by chromsome and start position only,
rather than chromsome, strand, start, and width.
Usage
1
isGenomeOrder(ds, strict = TRUE)
Arguments
ds
GenoSet or GRanges
strict
logical, should space/chromosome order be identical to that from chrOrder?
Value
logical
See Also
Other 'genome ordering': chrOrder,
toGenomeOrder
Examples
1
2
data(genoset,package='genoset')
isGenomeOrder( rowRanges(genoset.ds) )
genoset documentation built on Nov. 8, 2020, 6:07 p.m.
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Description Usage Arguments Value See Also Examples
Description
Checks that rows in each chr are ordered by start. If strict=TRUE, then chromosomes must be in order specified by chrOrder. isGenomeOrder for GRanges differs from order in that it orders by chromsome and start position only, rather than chromsome, strand, start, and width.
Usage
1 | isGenomeOrder(ds, strict = TRUE)
|
Arguments
ds |
GenoSet or GRanges |
strict |
logical, should space/chromosome order be identical to that from chrOrder? |
Value
logical
See Also
Other 'genome ordering': chrOrder,
toGenomeOrder
Examples
1 2 | data(genoset,package='genoset')
isGenomeOrder( rowRanges(genoset.ds) )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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