segs2Granges: GRanges from segment table
In genoset: A RangedSummarizedExperiment with methods for copy number analysis
Description
Usage
Arguments
Value
See Also
Description
GenoSet contains a number of functions that work on segments. Many work on a data.frame of
segments, like segTable and runCBS. This function converts one of these tables in a GRanges.
The three columns specifying the ranges become the GRanges and all other columns go into the 'mcols'
portion of the GRanges object.
Usage
1
segs2Granges(segs)
Arguments
segs
data.frame with loc.start, loc.end, and chrom columns, like from segTable or runCBS
Value
GRanges
See Also
Other 'segmented data': bounds2Rle,
rangeSegMeanLength, runCBS,
segPairTable, segTable,
segs2RleDataFrame, segs2Rle
genoset documentation built on Nov. 8, 2020, 6:07 p.m.
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Description Usage Arguments Value See Also
Description
GenoSet contains a number of functions that work on segments. Many work on a data.frame of segments, like segTable and runCBS. This function converts one of these tables in a GRanges. The three columns specifying the ranges become the GRanges and all other columns go into the 'mcols' portion of the GRanges object.
Usage
1 | segs2Granges(segs)
|
Arguments
segs |
data.frame with loc.start, loc.end, and chrom columns, like from segTable or runCBS |
Value
GRanges
See Also
Other 'segmented data': bounds2Rle,
rangeSegMeanLength, runCBS,
segPairTable, segTable,
segs2RleDataFrame, segs2Rle
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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