AIMS: AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("AIMS")
AuthorEric R. Paquet, Michael T. Hallett
Bioconductor views Classification GeneExpression Microarray RNASeq Software
Date of publicationNone
MaintainerEric R Paquet <eric.r.paquet@gmail.com>
LicenseArtistic-2.0
Version1.6.0
http://www.bci.mcgill.ca/AIMS

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/AIMS.R
README
build
build/vignette.rds
data
data/AIMSmodel.rda
data/mcgillExample.rda
inst
inst/doc
inst/doc/AIMS.R
inst/doc/AIMS.Rnw
inst/doc/AIMS.pdf
inst/unitTests
inst/unitTests/test_applyAIMS.R
man
man/AIMSmodel.Rd man/applyAIMS.Rd man/mcgillExample.Rd
tests
tests/runTests.R
vignettes
vignettes/AIMS.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.