AIMS: AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
Version 1.8.0

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Browse man pages Browse package API and functions Browse package files

AuthorEric R. Paquet, Michael T. Hallett
Bioconductor views Classification GeneExpression Microarray RNASeq Software
Date of publicationNone
MaintainerEric R Paquet <eric.r.paquet@gmail.com>
LicenseArtistic-2.0
Version1.8.0
URL http://www.bci.mcgill.ca/AIMS
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("AIMS")

Man pages

AIMSmodel: The AIMS model
applyAIMS: Function that will assign the AIMS subtype to a gene...
mcgillExample: Sample of a breast cancer gene expression dataset generated...

Functions

AIMSmodel Man page
apply.nbc Source code
applyAIMS Man page Source code
comp.sel.pairs Source code
get.all.pairs.genes Source code
mcgillExample Man page
one.vs.all.tsp Source code
removeDuplicatedEntrezPerPatients Source code
smaller Source code

Files

DESCRIPTION
NAMESPACE
R
R/AIMS.R
README
build
build/vignette.rds
data
data/AIMSmodel.rda
data/mcgillExample.rda
inst
inst/doc
inst/doc/AIMS.R
inst/doc/AIMS.Rnw
inst/doc/AIMS.pdf
inst/unitTests
inst/unitTests/test_applyAIMS.R
man
man/AIMSmodel.Rd
man/applyAIMS.Rd
man/mcgillExample.Rd
tests
tests/runTests.R
vignettes
vignettes/AIMS.Rnw
AIMS documentation built on May 20, 2017, 10:24 p.m.