AIMS: AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

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This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Author
Eric R. Paquet, Michael T. Hallett
Date of publication
None
Maintainer
Eric R Paquet <eric.r.paquet@gmail.com>
License
Artistic-2.0
Version
1.6.0
URLs

View on Bioconductor

Man pages

AIMSmodel
The AIMS model
applyAIMS
Function that will assign the AIMS subtype to a gene...
mcgillExample
Sample of a breast cancer gene expression dataset generated...

Files in this package

AIMS/DESCRIPTION
AIMS/NAMESPACE
AIMS/R
AIMS/R/AIMS.R
AIMS/README
AIMS/build
AIMS/build/vignette.rds
AIMS/data
AIMS/data/AIMSmodel.rda
AIMS/data/mcgillExample.rda
AIMS/inst
AIMS/inst/doc
AIMS/inst/doc/AIMS.R
AIMS/inst/doc/AIMS.Rnw
AIMS/inst/doc/AIMS.pdf
AIMS/inst/unitTests
AIMS/inst/unitTests/test_applyAIMS.R
AIMS/man
AIMS/man/AIMSmodel.Rd
AIMS/man/applyAIMS.Rd
AIMS/man/mcgillExample.Rd
AIMS/tests
AIMS/tests/runTests.R
AIMS/vignettes
AIMS/vignettes/AIMS.Rnw