mcgillExample: Sample of a breast cancer gene expression dataset generated...
In AIMS: AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Description Usage Details Value Author(s) See Also Examples

This is a breast cancer gene expression dataset generated at McGill University using the Affymetrix Gene ST platform. This is the validation dataset used in AIMS' paper and in use in the examples of AIMS.

1	mcgillExample

A sample of a breast cancer gene expression dataset currently generated at McGill University on the Affymetrix gene ST platform.

`D`	A matrix of gene gene expression, rows are genes and columns are samples
`EntrezID`	A vector of Entrez ids corresponding to genes (rows) of D

Eric R. Paquet (eric.r.paquet@gmail.com)

AIMSmodel, applyAIMS

## Load a sample of the McGill dataset used in the paper
data(mcgillExample)

## Dimensions of the gene expression matrix 
dim(mcgillExample$D)

## Number of EntrezID
length(mcgillExample$EntrezID)

Loading required package: e1071
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

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