API for AMARETTO
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

Global functions
AMARETTO_CreateModuleData Man page Source code
AMARETTO_CreateRegulatorPrograms Man page Source code
AMARETTO_Download Man page Source code
AMARETTO_EvaluateTestSet Man page Source code
AMARETTO_ExportResults Man page Source code
AMARETTO_HTMLreport Man page Source code
AMARETTO_Initialize Man page Source code
AMARETTO_LarsenBased Man page Source code
AMARETTO_LearnRegulatoryProgramsLarsen Man page Source code
AMARETTO_Preprocess Man page Source code
AMARETTO_ReassignGenesToClusters Man page Source code
AMARETTO_Run Man page Source code
AMARETTO_VisualizeModule Man page Source code
BatchData Man page
Beta.NA Man page Source code
ComBat_NoFiles Man page Source code
CreateRegulatorData Man page Source code
Driver_Genes Man page
FindTranscriptionallyPredictive_CNV Man page Source code
GeneSetDescription Man page Source code
GmtFromModules Man page Source code
HyperGTestGeneEnrichment Man page Source code
L Man page Source code
Lambda_Sequence Man page Source code
MsigdbMapping Man page
Preprocess_MAdata Man page Source code
ProcessedDataLIHC Man page
Save_CancerSite Man page Source code
TCGA_BatchCorrection_MolecularData Man page Source code
TCGA_GENERIC_BatchCorrection Man page Source code
TCGA_GENERIC_CheckBatchEffect Man page Source code
TCGA_GENERIC_CleanUpSampleNames Man page Source code
TCGA_GENERIC_GetSampleGroups Man page Source code
TCGA_GENERIC_MergeData Man page Source code
TCGA_Load_GISTICdata Man page Source code
TCGA_Load_MolecularData Man page Source code
aprior Man page Source code
bprior Man page Source code
build.design Man page Source code
cacheResource Man page Source code
computeGisticURL Man page Source code
design.mat Man page Source code
filter.absent Man page Source code
geneFiltering Man page Source code
get_firehoseData Man page Source code
int.eprior Man page Source code
it.sol Man page Source code
list.batch Man page Source code
plot_run_history Man page Source code
postmean Man page Source code
postvar Man page Source code
printf Man page Source code
readGMT Man page Source code
read_gct Man page Source code
trim.dat Man page Source code
write_gct Man page Source code
AMARETTO documentation built on April 29, 2020, 5:23 a.m.