get_firehoseData: get_firehoseData
In AMARETTO: Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression
View source: R/amaretto_download.R
Description
Downloading TCGA dataset via firehose
Usage
1
2
3
4
5
6
get_firehoseData(TargetDirectory = "./",
TCGA_acronym_uppercase = "LUAD", dataType = "stddata",
dataFileTag = "mRNAseq_Preprocess.Level_3", FFPE = FALSE,
fileType = "tar.gz",
gdacURL = "http://gdac.broadinstitute.org/runs/", untarUngzip = TRUE,
printDisease_abbr = FALSE)
Value
result
AMARETTO documentation built on Nov. 8, 2020, 7:37 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/amaretto_download.R
Description
Downloading TCGA dataset via firehose
Usage
1 2 3 4 5 6 | get_firehoseData(TargetDirectory = "./",
TCGA_acronym_uppercase = "LUAD", dataType = "stddata",
dataFileTag = "mRNAseq_Preprocess.Level_3", FFPE = FALSE,
fileType = "tar.gz",
gdacURL = "http://gdac.broadinstitute.org/runs/", untarUngzip = TRUE,
printDisease_abbr = FALSE)
|
Value
result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.