AMOUNTAIN: Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
Version 1.2.0

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

AuthorDong Li, Shan He, Zhisong Pan and Guyu Hu
Bioconductor views DifferentialExpression GeneExpression Microarray Network
Date of publicationNone
MaintainerDong Li <dxl466@cs.bham.ac.uk>
LicenseGPL (>= 2)
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("AMOUNTAIN")

Getting started

Usage of AMOUNTAIN"

Popular man pages

CGPFixSS: Module Identification
CGPFixSSMultiLayer: Module Identification for multi-layer network
CGPFixSSTwolayer: Module Identification for two-layer network
EuclideanProjectionENNORM: Euclidean projection on elastic net
moduleIdentificationGPFixSS: Module Identification
multilayernetworkSimulation: Illustration of multi-layer weighted network simulation
twolayernetworkSimulation: Illustration of two-layer weighted network simulation
See all...

All man pages Function index File listing

Man pages

CGPFixSS: Module Identification
CGPFixSSMultiLayer: Module Identification for multi-layer network
CGPFixSSTwolayer: Module Identification for two-layer network
EuclideanProjectionENNORM: Euclidean projection on elastic net
moduleIdentificationGPFixSS: Module Identification
moduleIdentificationGPFixSSMultilayer: Module Identification for multi-layer network
moduleIdentificationGPFixSSTwolayer: Module Identification for two-layer network
multilayernetworkSimulation: Illustration of multi-layer weighted network simulation
networkSimulation: Illustration of weighted network simulation
twolayernetworkSimulation: Illustration of two-layer weighted network simulation

Functions

Files

DESCRIPTION
NAMESPACE
R
R/AMOUNTAIN.R
R/AMOUNTAINC.R
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/AMOUNTAIN.R
inst/doc/AMOUNTAIN.Rmd
inst/doc/AMOUNTAIN.html
man
man/CGPFixSS.Rd
man/CGPFixSSMultiLayer.Rd
man/CGPFixSSTwolayer.Rd
man/EuclideanProjectionENNORM.Rd
man/moduleIdentificationGPFixSS.Rd
man/moduleIdentificationGPFixSSMultilayer.Rd
man/moduleIdentificationGPFixSSTwolayer.Rd
man/multilayernetworkSimulation.Rd
man/networkSimulation.Rd
man/twolayernetworkSimulation.Rd
src
src/AMOUNTAIN.c
src/Makevars
src/Makevars.win
vignettes
vignettes/AMOUNTAIN.Rmd
vignettes/Bibliography.bib
AMOUNTAIN documentation built on May 20, 2017, 10:27 p.m.

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