AMOUNTAIN: Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

AuthorDong Li, Shan He, Zhisong Pan and Guyu Hu
Date of publicationNone
MaintainerDong Li <dxl466@cs.bham.ac.uk>
LicenseGPL (>= 2)
Version1.0.0

View on Bioconductor

Files

AMOUNTAIN/DESCRIPTION
AMOUNTAIN/NAMESPACE
AMOUNTAIN/R
AMOUNTAIN/R/AMOUNTAIN.R
AMOUNTAIN/README.md
AMOUNTAIN/build
AMOUNTAIN/build/vignette.rds
AMOUNTAIN/inst
AMOUNTAIN/inst/NEWS
AMOUNTAIN/inst/doc
AMOUNTAIN/inst/doc/AMOUNTAIN.R
AMOUNTAIN/inst/doc/AMOUNTAIN.Rnw
AMOUNTAIN/inst/doc/AMOUNTAIN.pdf
AMOUNTAIN/man
AMOUNTAIN/man/EuclideanProjectionENNORM.Rd AMOUNTAIN/man/moduleIdentificationGPFixSS.Rd AMOUNTAIN/man/moduleIdentificationGPFixSSMultilayer.Rd AMOUNTAIN/man/moduleIdentificationGPFixSSTwolayer.Rd AMOUNTAIN/man/networkSimulation.Rd AMOUNTAIN/man/twolayernetworkSimulation.Rd AMOUNTAIN/man/vecconsensus.Rd
AMOUNTAIN/vignettes
AMOUNTAIN/vignettes/AMOUNTAIN.Rnw

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