Files in APAlyzer

A toolkit for APA analysis using RNA-seq data

.travis.yml

.BBSoptions

README.md

NEWS

NAMESPACE

DESCRIPTION

_config.yml

LICENSE

build/vignette.rds

R/APAdiff.R R/APAlyzer.R R/IPA_analysis.R R/APAPlots.R R/PAS2GEF.R vignettes/APAlyzer.Rmd

vignettes/REDbox.png

vignettes/APAlyzer.bib

vignettes/REDvoca.png

longtests/runTests.R longtests/testthat/test_PAS2GEF.R man/APAVolcano.Rd man/APABox.Rd man/PAS2GEF.Rd man/REFCDS.Rd man/REF3UTR.Rd man/download_testbam.Rd man/REF4PAS.Rd man/GENEXP_CDS.Rd man/APAdiff.Rd man/PASEXP_3UTR.Rd man/PASEXP_IPA.Rd tests/runTests.R tests/testthat/test_APAdiff.R tests/testthat/test_IPA_analysis.R tests/testthat/test_APAPlots.R tests/testthat/test_APAlyzer.R

inst/CITATION

inst/doc/APAlyzer.Rmd

inst/doc/APAlyzer.html

inst/doc/APAlyzer.R

inst/extdata/mm9_REF.RData

inst/extdata/mm9_TBX20.APAout.RData

inst/extdata/mm9.chr19.refGene.R.DB

inst/extdata/mm9_tissues_rawout.RData

inst/extdata/mm9_TBX20.APAdiff_OUT.RData

APAlyzer documentation built on Nov. 8, 2020, 4:54 p.m.