API for ASICS
Automatic Statistical Identification in Complex Spectra

Global functions
.ASICSInternal	Source code
.AUC	Source code
.alignAlgo	Source code
.alignmentIdx	Source code
.allShift	Source code
.allShift_internal	Source code
.binningSpectrum	Source code
.changeGrid	Source code
.cleanLibrary	Source code
.combineOPLSDAResults	Source code
.compute_correlation	Source code
.compute_gradient	Source code
.concentrationOpti_FWER	Source code
.concentrationOpti_MRLasso	Source code
.correlation_buckets	Source code
.createEnv	Source code
.deformLibrary	Source code
.deformSpectra	Source code
.deforme	Source code
.doAlignment	Source code
.doShift	Source code
.do_shift_corr	Source code
.errorPred	Source code
.findNoiseSD	Source code
.findPeaks	Source code
.format_results	Source code
.getBrukerParam	Source code
.getSD	Source code
.isSignal	Source code
.lmConstrained	Source code
.localOptimum	Source code
.newton_volume	Source code
.optimal_thres_uni	Source code
.phi	Source code
.plotEigen	Source code
.plotIndiv	Source code
.plotOPLSDA	Source code
.plotPCA	Source code
.plotSpectrum	Source code
.plotTests	Source code
.plotVar	Source code
.readNMRBruker	Source code
.removeAreas	Source code
.same_shift	Source code
.shift_spec	Source code
.shrink	Source code
.signalWithShift	Source code
.simu_coeff	Source code
.translateLibrary	Source code
.translateLibrary_combineVersion	Source code
ASICS	Man page Source code
ASICSResults-class	Man page
ASICSUsersGuide	Man page Source code
AnalysisResults-class	Man page
PureLibrary-class	Man page
Spectra-class	Man page
[,ASICSResults,ANY,ANY,ANY-method	Man page
[,PureLibrary,ANY,ANY,ANY-method	Man page
[,Spectra,ANY,ANY,ANY-method	Man page
[.ASICSResults	Man page
[.PureLibrary	Man page
[.Spectra	Man page
accessors-methods	Man page
alignSpectra	Man page Source code
binning	Man page Source code
c,ASICSResults-method	Man page
c,PureLibrary-method	Man page
c,Spectra-method	Man page
c.ASICSResults	Man page
c.PureLibrary	Man page
c.Spectra	Man page
combineAndSubset-methods	Man page
createPureLibrary	Man page Source code
createSpectra	Man page Source code
dim,ASICSResults-method	Man page
dim,Spectra-method	Man page
dim.Spectra	Man page
formatForAnalysis	Man page Source code
getBestModel	Man page
getBestModel,AnalysisResults-method	Man page
getCVError	Man page
getCVError,AnalysisResults-method	Man page
getDataset	Man page
getDataset,AnalysisResults-method	Man page
getDeformedLibrary	Man page
getDeformedLibrary,ASICSResults-method	Man page
getMeanByGroup	Man page
getMeanByGroup,AnalysisResults-method	Man page
getNbProtons	Man page
getNbProtons,PureLibrary-method	Man page
getNormMethod	Man page
getNormMethod,Spectra-method	Man page
getNormParams	Man page
getNormParams,Spectra-method	Man page
getPpmGrid	Man page
getPpmGrid,Spectra-method	Man page
getQuantification	Man page
getQuantification,ASICSResults-method	Man page
getReconstructedSpectra	Man page
getReconstructedSpectra,ASICSResults-method	Man page
getResults	Man page
getResults,AnalysisResults-method	Man page
getSampleName	Man page
getSampleName,Spectra-method	Man page
getSpectra	Man page
getSpectra,Spectra-method	Man page
getTypeAnalysis	Man page
getTypeAnalysis,AnalysisResults-method	Man page
getTypeData	Man page
getTypeData,AnalysisResults-method	Man page
importSpectra	Man page Source code
importSpectraBruker	Man page Source code
kruskalWallis	Man page Source code
length,Spectra-method	Man page
length.Spectra	Man page
normaliseSpectra	Man page Source code
oplsda	Man page Source code
pca	Man page Source code
plot,ASICSResults,ANY-method	Man page
plot,AnalysisResults,ANY-method	Man page
plot,Spectra,ANY-method	Man page
plot.ASICSResults	Man page
plot.AnalysisResults	Man page
plot.Spectra	Man page
plotAlignment	Man page Source code
pure_library	Man page
show,ASICSResults-method	Man page
show,AnalysisResults-method	Man page
show,Spectra-method	Man page
show.ASICSResults	Man page
show.AnalysisResults	Man page
show.Spectra	Man page
simulate_spectra	Man page Source code
summary,AnalysisResults-method	Man page
summary,Spectra-method	Man page
summary-methods	Man page
summary.AnalysisResults	Man page
summary.Spectra	Man page
visualisation-methods-analyses	Man page
visualisation-methods-spectra	Man page