AnalysisResults-class: Class AnalysisResults

Description Slots Methods

Description

Objects of class AnalysisResults contains results of analyses performed with the functions pca, oplsda and kruskalWallis.

Slots

type.analysis

Name of the analysis (e.g., "PCA", "OPLS-DA", ...).

type.data

Type of data used for the analyses (e.g., "quantification", "buckets"...).

dataset

The object of type SummarizedExperiment used for the analysis.

results

Results of the analysis. Can be a data frame for test results or an object of class opls from ropls for PCA and OPLS-DA.

best.model

Best model (only for OPLS-DA analyses).

cv.error

Cross validation error (only for OPLS-DA analyses).

mean.by.group

Data frame with means by group and a variable indicating if there is a significant difference between groups for tests and if the VIP associated to the variable is superior to the given threshold for OPLS-DA.

Methods

Multiple methods can be applied on AnalysisResults objects.


ASICS documentation built on Nov. 8, 2020, 8:19 p.m.