assign.convergence | Check the convergence of the MCMC chain |
assign.cv.output | Cross validation output |
assign.mcmc | The Gibbs sampling algorithm to approximate the joint... |
assign.output | Prediction/validation output for test data |
assign.preprocess | Input data preprocessing |
assign.summary | Summary of the model parameters estimated by the Gibbs... |
assign.wrapper | ASSIGN All-in-one function |
ComBat.step2 | Perform the second step of ComBat |
excludegenes | Exclude Gene List |
gather_assign_results | Gather the ASSIGN results in a specific directory |
geneList1 | Pathway signature gene sets |
gfrn_geneList | Pathway Signature Gene Lists |
merge_drop | Combine two data frames |
optimizeGFRN | Optimize GFRN gene lists lengths |
pcaplot | Display a PCA Plot of the Data |
runassignGFRN | Run optimized single pathway ASSIGN |
testData1 | Gene expression profiling from cancer patients (test dataset) |
trainingData1 | Gene expression profiling from cell line perturbation... |
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