Man pages for ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)

assign.convergenceCheck the convergence of the MCMC chain
assign.cv.outputCross validation output
assign.mcmcThe Gibbs sampling algorithm to approximate the joint...
assign.outputPrediction/validation output for test data
assign.preprocessInput data preprocessing
assign.summarySummary of the model parameters estimated by the Gibbs...
assign.wrapperASSIGN All-in-one function
ComBat.step2Perform the second step of ComBat
excludegenesExclude Gene List
gather_assign_resultsGather the ASSIGN results in a specific directory
geneList1Pathway signature gene sets
gfrn_geneListPathway Signature Gene Lists
merge_dropCombine two data frames
optimizeGFRNOptimize GFRN gene lists lengths
pcaplotDisplay a PCA Plot of the Data
runassignGFRNRun optimized single pathway ASSIGN
testData1Gene expression profiling from cancer patients (test dataset)
trainingData1Gene expression profiling from cell line perturbation...
ASSIGN documentation built on May 7, 2019, 2 a.m.