API for AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Global functions
.AUC.geneSet_norm Source code
.AUC.geneSet_old Source code
.AUCell_buildRankings Source code
.AUCell_calcAUC Source code
.auc Source code
.auc_assignmnetThreshold_v6 Source code
.auc_plotBinaryTsne Source code
.auc_plotGradientTsne Source code
.auc_plotHist Source code
.cellProps_plotTsne Source code
AUCell_buildRankings Man page
AUCell_buildRankings,ExpressionSet-method Man page
AUCell_buildRankings,SummarizedExperiment-method Man page
AUCell_buildRankings,dgCMatrix-method Man page
AUCell_buildRankings,matrix-method Man page
AUCell_calcAUC Man page
AUCell_calcAUC,GeneSet-method Man page
AUCell_calcAUC,GeneSetCollection-method Man page
AUCell_calcAUC,character-method Man page
AUCell_calcAUC,list-method Man page
AUCell_createViewerApp Man page Source code
AUCell_exploreThresholds Man page Source code
AUCell_plotHist Man page Source code
AUCell_plotTSNE Man page Source code
asHTML Source code
aucellResults Man page
aucellResults-class Man page
cbind Man page
cbind,aucellResults-method Man page
getAUC Man page
getAUC,aucellResults-method Man page
getAssignments Man page Source code
getRanking Man page
getRanking,aucellResults-method Man page
getThresholdSelected Man page Source code
nGenes Man page
nGenes,GeneSet-method Man page
nGenes,GeneSetCollection-method Man page
orderAUC Man page Source code
plotGeneCount Man page Source code
plotTsne_cellProps Man page Source code
rbind Man page
rbind,aucellResults-method Man page
setGeneSetNames Man page
setGeneSetNames,GeneSetCollection-method Man page
show Man page
show,aucellResults-method Man page
subsetGeneSets Man page
subsetGeneSets,GeneSetCollection-method Man page
updateAucellResults Man page Source code
AUCell documentation built on Nov. 8, 2020, 5:51 p.m.