API for AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Global functions
AUC.geneSet_norm Source code
AUC.geneSet_old Source code
AUCell_buildRankings Man page Source code
AUCell_buildRankings,ExpressionSet-method Man page
AUCell_buildRankings,SummarizedExperiment-method Man page
AUCell_buildRankings,dgCMatrix-method Man page
AUCell_buildRankings,matrix-method Man page
AUCell_calcAUC Man page Source code
AUCell_calcAUC,GeneSet-method Man page
AUCell_calcAUC,GeneSetCollection-method Man page
AUCell_calcAUC,character-method Man page
AUCell_calcAUC,list-method Man page
AUCell_createViewerApp Man page Source code
AUCell_exploreThresholds Man page Source code
AUCell_plotHist Man page Source code
AUCell_plotTSNE Man page Source code
asHTML Source code
auc Source code
auc_assignmnetThreshold_v6 Source code
auc_plotBinaryTsne Source code
auc_plotGradientTsne Source code
auc_plotHist Source code
aucellResults Man page
aucellResults-class Man page
getAUC Man page Man page
getAUC,aucellResults-method Man page
getAssignments Man page Source code
getRanking Man page Man page
getRanking,aucellResults-method Man page
getThresholdSelected Man page Man page Source code
nGenes Man page
nGenes,GeneSet-method Man page
nGenes,GeneSetCollection-method Man page
plotGeneCount Man page Source code
setGeneSetNames Man page
setGeneSetNames,GeneSetCollection-method Man page
show Man page
show,aucellResults-method Man page
subsetGeneSets Man page
subsetGeneSets,GeneSetCollection-method Man page
updateAucellResults Man page Source code
AUCell documentation built on May 5, 2018, 6:02 p.m.