Files in AUCell

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/aux_AUCell_plotTSNE.R R/aux_updateAucellResults.R R/aux_createViewerApp.R R/aux_thresholds.R R/03_exploreThresholds.R R/aux_orderAUC.R R/priv_auc.assignmnetThreshold_v6.R R/02_calcAUC.R R/aux_plotGeneCount.R R/01_buildRankings.R R/class_aucellResults.R R/aux_methods.R R/priv_plots.R R/aux_AUCell_plotHist.R vignettes/AUCell.Rmd

vignettes/corrected.css

man/AUCell_calcAUC.Rd man/GeneSet-methods.Rd man/AUCell_plotHist.Rd man/plotGeneCount.Rd man/orderAUC.Rd man/updateAucellResults.Rd man/plotTsne_cellProps.Rd man/AUCell_buildRankings.Rd man/AUCell_plotTSNE.Rd man/AUCell_exploreThresholds.Rd man/aucellResults-class.Rd man/AUCell_createViewerApp.Rd tests/testthat.R tests/testthat/test_GeneSet_methods.R tests/testthat/test_AUCell_exploreThresholds.R tests/testthat/test_plotGeneCount.R tests/testthat/test_class_aucResults.R tests/testthat/test_AUCell_plot.R tests/testthat/test_AUCell_buildRankings.R tests/testthat/test_AUCell_calcAUC.R

inst/CITATION

inst/doc/AUCell.html

inst/doc/AUCell.Rmd inst/doc/AUCell.R

inst/examples/geneSignatures.gmt

inst/examples/example_AUCell_plotTSNE.R inst/examples/example_AUCell_createViewerApp.R inst/examples/example_AUCell_buildRankings.R inst/examples/example_geneSet_methods.R inst/examples/example_AUCell_exploreThresholds.R inst/examples/example_aucellResults_class.R

inst/examples/cellsTsne.RData

inst/examples/mouseBrain_cellLabels.tsv

inst/examples/example_AUCell_plotHist.R inst/examples/example_AUCell_calcAUC.R

AUCell documentation built on Nov. 8, 2020, 5:51 p.m.