example_geneSet_methods.R
In AUCell: AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

library(GSEABase)
genes_1 <- GeneSet(paste("Gene", 1:20, sep=""), setName="geneSet1")
genes_2 <- GeneSet(paste("Gene", 18:22, sep=""), setName="geneSet2")
geneSets <- GeneSetCollection(genes_1, genes_2)

nGenes(genes_1)
nGenes(geneSets)

subsetGeneSets(geneSets, paste("Gene", 15:20, sep=""))

geneSets_newNames <- setGeneSetNames(geneSets, c("one", "two"))
names(geneSets_newNames)

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AUCell documentation built on Nov. 8, 2020, 5:51 p.m.

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AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

inst/examples/example_geneSet_methods.R
In AUCell: AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

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AUCell AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

inst/examples/example_geneSet_methods.R In AUCell: AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Try the AUCell package in your browser

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We want your feedback!

AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

inst/examples/example_geneSet_methods.R
In AUCell: AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)