readMage: Read DTT (MAGE) sample attribute files

Description Usage Arguments Value Author(s) See Also Examples

Description

This functions reads the content of Affymetrix DTT (MAGE) sample attribute files created by GCOS. Objects are represented as R classes. Navigation and extraction of data are described in the vignette ‘Retrieving MAGE and ARR sample attributes’.

Usage

1
readMage(fls, ...)

Arguments

fls

A character vector containing the paths to files to be read.

...

Additional arguments, currently unused.

Value

An object or list of objects of class ArrayFileSet, depending on whether one or several file paths are provided.

Author(s)

Martin Morgan

See Also

The vignette ‘Retrieving MAGE and ARR sample attributes’ for detailed illustration of use.

xclass and readXml for advanced access methods.

Examples

1
2
3
4
dir <- system.file("extdata", "DTT", package="AffyCompatible")
fls <- list.files(dir, full=TRUE)
basename(fls)
readArr(fls[[1]])

AffyCompatible documentation built on Nov. 1, 2018, 2:24 a.m.