AffyTiling: Easy extraction of individual probes in Affymetrix tiling arrays
Version 1.29.0

This package provides easy, fast functions for the extraction and annotation of individual probes from Affymetrix tiling arrays.

Browse man pages Browse package API and functions Browse package files

AuthorCharles G. Danko <dankoc@gmail.com>
Date of publicationNone
MaintainerCharles G. Danko <dankoc@gmail.com>
LicenseGPL (>= 2)
Version1.29.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("AffyTiling")

Man pages

AnalyzeTilingCelFiles: Background correction and RNA normalization for CEL files...
AssociateWithGenes: Associates a vector of probe positions with the nearest input...
AssociateWithInterval: Returns index of association between a probe and a set of...
Einter: Sample intensities for human promoter tiling array.
KG: Position of known genes in the first 2 Mb of human chromosome...
KnownGenes: Sample intensities for human promoter tiling array.
parseBPMAP: Returns information from a BPMAP file for select probes in an...
TilingCelFiles2Probesets: Background correction and RNA normalization for CEL files...

Functions

AnalyzeTilingCelFiles Man page
AssociateWithGenes Man page
AssociateWithInterval Man page
Data used to demonstrate AffyTiling. Man page
Einter Man page
KG Man page
KnownGenes Man page
TilingCelFiles2Probesets Man page
gene positions Man page
intensities Man page
parseBPMAP Man page

Files

AffyTiling/DESCRIPTION
AffyTiling/NAMESPACE
AffyTiling/R
AffyTiling/R/AnalyzeTilingCelFiles.R
AffyTiling/R/AssociateWithGenes.R
AffyTiling/R/AssociateWithInterval.R
AffyTiling/R/TilingCelFiles2Probesets.R
AffyTiling/R/parseBPMAP.R
AffyTiling/build
AffyTiling/build/vignette.rds
AffyTiling/data
AffyTiling/data/KnownGenes.rda
AffyTiling/inst
AffyTiling/inst/doc
AffyTiling/inst/doc/AffyTiling.R
AffyTiling/inst/doc/AffyTiling.Rnw
AffyTiling/inst/doc/AffyTiling.pdf
AffyTiling/man
AffyTiling/man/AnalyzeTilingCelFiles.Rd
AffyTiling/man/AssociateWithGenes.Rd
AffyTiling/man/AssociateWithInterval.Rd
AffyTiling/man/Einter.Rd
AffyTiling/man/KG.Rd
AffyTiling/man/KnownGenes.Rd
AffyTiling/man/TilingCelFiles2Probesets.Rd
AffyTiling/man/parseBPMAP.Rd
AffyTiling/src
AffyTiling/src/AnnotateProbes.cpp
AffyTiling/src/Makevars
AffyTiling/src/Makevars.win
AffyTiling/src/R_affx_constants.h
AffyTiling/src/R_affx_parseBPMAP.cpp
AffyTiling/src/_mingw.h
AffyTiling/src/fusion_sdk
AffyTiling/src/fusion_sdk/file
AffyTiling/src/fusion_sdk/file/BPMAPFileData.cpp
AffyTiling/src/fusion_sdk/file/BPMAPFileData.h
AffyTiling/src/fusion_sdk/file/BPMAPFileWriter.cpp
AffyTiling/src/fusion_sdk/file/BPMAPFileWriter.h
AffyTiling/src/fusion_sdk/file/FileIO.cpp
AffyTiling/src/fusion_sdk/file/FileIO.h
AffyTiling/src/fusion_sdk/file/FileWriter.cpp
AffyTiling/src/fusion_sdk/file/FileWriter.h
AffyTiling/src/fusion_sdk/file/TagValuePair.h
AffyTiling/src/fusion_sdk/portability
AffyTiling/src/fusion_sdk/portability/affy-base-types.h
AffyTiling/src/fusion_sdk/util
AffyTiling/src/fusion_sdk/util/Convert.cpp
AffyTiling/src/fusion_sdk/util/Convert.h
AffyTiling/src/fusion_sdk/util/Err.h
AffyTiling/src/fusion_sdk/util/ErrHandler.h
AffyTiling/src/fusion_sdk/util/Except.h
AffyTiling/src/fusion_sdk/util/MessageStream.h
AffyTiling/src/fusion_sdk/util/MsgHandler.h
AffyTiling/src/fusion_sdk/util/MsgStream.cpp
AffyTiling/src/fusion_sdk/util/MsgStream.h
AffyTiling/src/fusion_sdk/util/ProgressDot.h
AffyTiling/src/fusion_sdk/util/ProgressHandler.h
AffyTiling/src/fusion_sdk/util/Verbose.cpp
AffyTiling/src/fusion_sdk/util/Verbose.h
AffyTiling/src/fusion_sdk/util/VerboseErrHandler.h
AffyTiling/vignettes
AffyTiling/vignettes/AffyTiling.Rnw
AffyTiling documentation built on Oct. 5, 2016, 4:12 a.m.