AffyTiling: Easy extraction of individual probes in Affymetrix tiling arrays

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This package provides easy, fast functions for the extraction and annotation of individual probes from Affymetrix tiling arrays.

Author
Charles G. Danko <dankoc@gmail.com>
Date of publication
None
Maintainer
Charles G. Danko <dankoc@gmail.com>
License
GPL (>= 2)
Version
1.29.0

View on Bioconductor

Man pages

AnalyzeTilingCelFiles
Background correction and RNA normalization for CEL files...
AssociateWithGenes
Associates a vector of probe positions with the nearest input...
AssociateWithInterval
Returns index of association between a probe and a set of...
Einter
Sample intensities for human promoter tiling array.
KG
Position of known genes in the first 2 Mb of human chromosome...
KnownGenes
Sample intensities for human promoter tiling array.
parseBPMAP
Returns information from a BPMAP file for select probes in an...
TilingCelFiles2Probesets
Background correction and RNA normalization for CEL files...

Files in this package

AffyTiling/DESCRIPTION
AffyTiling/NAMESPACE
AffyTiling/R
AffyTiling/R/AnalyzeTilingCelFiles.R
AffyTiling/R/AssociateWithGenes.R
AffyTiling/R/AssociateWithInterval.R
AffyTiling/R/TilingCelFiles2Probesets.R
AffyTiling/R/parseBPMAP.R
AffyTiling/build
AffyTiling/build/vignette.rds
AffyTiling/data
AffyTiling/data/KnownGenes.rda
AffyTiling/inst
AffyTiling/inst/doc
AffyTiling/inst/doc/AffyTiling.R
AffyTiling/inst/doc/AffyTiling.Rnw
AffyTiling/inst/doc/AffyTiling.pdf
AffyTiling/man
AffyTiling/man/AnalyzeTilingCelFiles.Rd
AffyTiling/man/AssociateWithGenes.Rd
AffyTiling/man/AssociateWithInterval.Rd
AffyTiling/man/Einter.Rd
AffyTiling/man/KG.Rd
AffyTiling/man/KnownGenes.Rd
AffyTiling/man/TilingCelFiles2Probesets.Rd
AffyTiling/man/parseBPMAP.Rd
AffyTiling/src
AffyTiling/src/AnnotateProbes.cpp
AffyTiling/src/Makevars
AffyTiling/src/Makevars.win
AffyTiling/src/R_affx_constants.h
AffyTiling/src/R_affx_parseBPMAP.cpp
AffyTiling/src/_mingw.h
AffyTiling/src/fusion_sdk
AffyTiling/src/fusion_sdk/file
AffyTiling/src/fusion_sdk/file/BPMAPFileData.cpp
AffyTiling/src/fusion_sdk/file/BPMAPFileData.h
AffyTiling/src/fusion_sdk/file/BPMAPFileWriter.cpp
AffyTiling/src/fusion_sdk/file/BPMAPFileWriter.h
AffyTiling/src/fusion_sdk/file/FileIO.cpp
AffyTiling/src/fusion_sdk/file/FileIO.h
AffyTiling/src/fusion_sdk/file/FileWriter.cpp
AffyTiling/src/fusion_sdk/file/FileWriter.h
AffyTiling/src/fusion_sdk/file/TagValuePair.h
AffyTiling/src/fusion_sdk/portability
AffyTiling/src/fusion_sdk/portability/affy-base-types.h
AffyTiling/src/fusion_sdk/util
AffyTiling/src/fusion_sdk/util/Convert.cpp
AffyTiling/src/fusion_sdk/util/Convert.h
AffyTiling/src/fusion_sdk/util/Err.h
AffyTiling/src/fusion_sdk/util/ErrHandler.h
AffyTiling/src/fusion_sdk/util/Except.h
AffyTiling/src/fusion_sdk/util/MessageStream.h
AffyTiling/src/fusion_sdk/util/MsgHandler.h
AffyTiling/src/fusion_sdk/util/MsgStream.cpp
AffyTiling/src/fusion_sdk/util/MsgStream.h
AffyTiling/src/fusion_sdk/util/ProgressDot.h
AffyTiling/src/fusion_sdk/util/ProgressHandler.h
AffyTiling/src/fusion_sdk/util/Verbose.cpp
AffyTiling/src/fusion_sdk/util/Verbose.h
AffyTiling/src/fusion_sdk/util/VerboseErrHandler.h
AffyTiling/vignettes
AffyTiling/vignettes/AffyTiling.Rnw